RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 BRD3Q15059 726 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 KIAA0319LQ8IZA0 1049 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 RAD54LQ92698 747 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 NOC4LQ9BVI4 516 aaKnown RBP18.98■□□□□ 0.63
SHOX-204ENST00000554971 TTYH3Q9C0H2 523 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 ZMYND15Q9H091 742 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 RNF225M0QZC1 329 aaPredicted RBP18.98■□□□□ 0.63
SHOX-204ENST00000554971 EVI5O60447 810 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 PRKCSHP14314 528 aaPredicted RBP18.98■□□□□ 0.63
SHOX-204ENST00000554971 CYLC1P35663 651 aaPredicted RBP18.98■□□□□ 0.63
SHOX-204ENST00000554971 EFCAB12Q6NXP0 572 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 TRAF7Q6Q0C0 670 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 DNAJB3Q8WWF6 145 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 DPF3Q92784 378 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 CNOT6LQ96LI5 555 aaKnown RBP18.98■□□□□ 0.63
SHOX-204ENST00000554971 TMEM39AQ9NV64 488 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 FHOD1Q9Y613 1164 aa18.98■□□□□ 0.63
SHOX-204ENST00000554971 SMIM35A0A1B0GVV1 85 aa18.97■□□□□ 0.63
SHOX-204ENST00000554971 TLR3O15455 904 aaKnown RBP18.97■□□□□ 0.63
SHOX-204ENST00000554971 MTIF2P46199 727 aaKnown RBP18.97■□□□□ 0.63
SHOX-204ENST00000554971 TAF2Q6P1X5 1199 aa18.97■□□□□ 0.63
SHOX-204ENST00000554971 KCTD17Q8N5Z5 321 aa18.97■□□□□ 0.63
SHOX-204ENST00000554971 METTL13Q8N6R0 699 aa18.97■□□□□ 0.63
SHOX-204ENST00000554971 RUSC1Q9BVN2 902 aa18.97■□□□□ 0.63
SHOX-204ENST00000554971 FAM49AQ9H0Q0 323 aaPredicted RBP18.97■□□□□ 0.63
SHOX-204ENST00000554971 WNT8AQ9H1J5 351 aa18.97■□□□□ 0.63
SHOX-204ENST00000554971 SUGCTQ9HAC7 445 aa18.97■□□□□ 0.63
SHOX-204ENST00000554971 PRDM5Q9NQX1 630 aaPredicted RBP18.97■□□□□ 0.63
SHOX-204ENST00000554971 CCDC151A5D8V7 595 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 KIAA0355O15063 1070 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 MAGEB2O15479 319 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 USO1O60763 962 aaKnown RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 PLA2G4BP0C869 781 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 CKBP12277 381 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 POLGP54098 1239 aaPredicted RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 EMC2Q15006 297 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 PADI6Q6TGC4 694 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 SYT2Q8N9I0 419 aaPredicted RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 ACRBPQ8NEB7 543 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 EDEM3Q9BZQ6 932 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 POLD4Q9HCU8 107 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 PPME1Q9Y570 386 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 DGAT1O75907 488 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 IPO7O95373 1038 aaKnown RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 PNMA6AP0CW24 399 aaPredicted RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 TRIM21P19474 475 aaKnown RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 HNRNPH3P31942 346 aaKnown RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 TMEM62Q0P6H9 643 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 MCM6Q14566 821 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 ARSHQ5FYA8 562 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 RINT1Q6NUQ1 792 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 RPAINQ86UA6 219 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 SLC35F6Q8N357 371 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 KIAA0895Q8NCT3 520 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 HNRNPLLQ8WVV9 542 aaKnown RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 SLC7A3Q8WY07 619 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 TMEM143Q96AN5 459 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 OSBPL7Q9BZF2 842 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 IRX2Q9BZI1 471 aaPredicted RBP18.96■□□□□ 0.63
SHOX-204ENST00000554971 PPP1R12CQ9BZL4 782 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 HIPK3Q9H422 1215 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 ARFGAP3Q9NP61 516 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 GPRC5CQ9NQ84 441 aa18.96■□□□□ 0.63
SHOX-204ENST00000554971 ARHGEF35A5YM69 484 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 MYMKA6NI61 221 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 EIF3CLB5ME19 914 aaKnown RBP18.95■□□□□ 0.62
SHOX-204ENST00000554971 VTNP04004 478 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 SYN1P17600 705 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 CYP2C18P33260 490 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 THPOP40225 353 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 RFC5P40937 340 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 EHHADHQ08426 723 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 MBTPS1Q14703 1052 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 ZNF618Q5T7W0 954 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 C1orf186Q6ZWK4 172 aa18.95■□□□□ 0.62
SHOX-204ENST00000554971 EIF3CQ99613 913 aaKnown RBP18.95■□□□□ 0.62
SHOX-204ENST00000554971 PES1O00541 588 aaKnown RBP18.94■□□□□ 0.62
SHOX-204ENST00000554971 PITPNM1O00562 1244 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 KIF20AO95235 890 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 GPNMBQ14956 572 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 MIIPQ5JXC2 388 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 TEX35Q5T0J7 233 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 WDR59Q6PJI9 974 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 CAGE1Q8TC20 777 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 VWCEQ96DN2 955 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 CCDC43Q96MW1 224 aaKnown RBP18.94■□□□□ 0.62
SHOX-204ENST00000554971 CHP1Q99653 195 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 TSG101Q99816 390 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 PARD6BQ9BYG5 372 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 SEMA6BQ9H3T3 888 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 ZMYND8Q9ULU4 1186 aaPredicted RBP18.94■□□□□ 0.62
SHOX-204ENST00000554971 CHD9Q3L8U1 2897 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 KRT86O43790 486 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 CHRNA1P02708 482 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 CTSHP09668 335 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 CYP11B2P19099 503 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 MGAT3Q09327 533 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 MAN2A1Q16706 1144 aa18.94■□□□□ 0.62
SHOX-204ENST00000554971 CC2D1AQ6P1N0 951 aaPredicted RBP18.94■□□□□ 0.62
SHOX-204ENST00000554971 MAEAQ7L5Y9 396 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms