RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 POMCP01189 267 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 ITGA4P13612 1032 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 GUCY2CP25092 1073 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 MLH1P40692 756 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 SLC11A1P49279 550 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 NASPP49321 788 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 NCBP1Q09161 790 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 PRPF4BQ13523 1007 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 PPP2R5AQ15172 486 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 MAPK6Q16659 721 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 FAM187BQ17R55 369 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 SLC27A1Q6PCB7 646 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 RBM23Q86U06 439 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 GPBP1Q86WP2 473 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 SLC39A11Q8N1S5 342 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 LINC00301Q8NCQ3 95 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 PGBD4Q96DM1 585 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 CALML4Q96GE6 196 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 ZNF558Q96NG5 402 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 CCSER1Q9C0I3 900 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 NT5C3AQ9H0P0 336 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 NSUN3Q9H649 340 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 IGFLR1Q9H665 355 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 AAASQ9NRG9 546 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 ZDHHC9Q9Y397 364 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 CNTNAP2Q9UHC6 1331 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 SPTBN5Q9NRC6 3674 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 NCOR1O75376 2440 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 ARL5CA6NH57 179 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 F8W810 466 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 ACKR2O00590 384 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 F13A1P00488 732 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 GALTP07902 379 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 SCNN1GP51170 649 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 RBM10P98175 930 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 RNASELQ05823 741 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 STK38Q15208 465 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 PCBP1Q15365 356 aaKnown RBP eCLIP12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 TIGD5Q53EQ6 642 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 NAALADL2Q58DX5 795 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 EP400NLQ6ZTU2 488 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 RASSF8Q8NHQ8 419 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 RABGGTAQ92696 567 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 RAD54LQ92698 747 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 HLA-CQ95604 372 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 CCDC51Q96ER9 411 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 DRC1Q96MC2 740 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 ASB2Q96Q27 587 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 REEP2Q9BRK0 252 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 COL25A1Q9BXS0 654 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 TRIM6Q9C030 488 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 LMAN2LQ9H0V9 348 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 C2orf40Q9H1Z8 148 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 UBE2ZQ9H832 354 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 SPG21Q9NZD8 308 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 CACNG4Q9UBN1 327 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 TCF20Q9UGU0 1960 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 VCANP13611 3396 aa12.77□□□□□ -0.37
CCDC88C-208ENST00000554165 XIRP2A4UGR9 3374 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 H3BQ06 376 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 K7ERI5 159 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 PER2O15055 1255 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 KCNA5P22460 613 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 MRPS5P82675 430 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 DLX2Q07687 328 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 DMP1Q13316 513 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 GIT2Q14161 759 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 TMEM132AQ24JP5 1023 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 PLPP4Q5VZY2 271 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 KRI1Q8N9T8 703 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 GSTCDQ8NEC7 633 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 MICAL1Q8TDZ2 1067 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 ATXN2LQ8WWM7 1075 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 MRPS27Q92552 414 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 PRIMPOLQ96LW4 560 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 NECAB3Q96P71 396 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 TARS2Q9BW92 718 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 VN1R3Q9BXE9 311 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 MRPL9Q9BYD2 267 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 KMT5AQ9NQR1 393 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 TLR9Q9NR96 1032 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 SNTG2Q9NY99 539 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 ARHGAP28Q9P2N2 729 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 PARP2Q9UGN5 583 aa12.76□□□□□ -0.37
CCDC88C-208ENST00000554165 HIDE1A8MVS5 230 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 FSCN2O14926 492 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 N4BP3O15049 544 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 SPTLC2O15270 562 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 SLC26A4O43511 780 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 BMP1P13497 986 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 PLS3P13797 630 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 LTBRP36941 435 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 NRIP1P48552 1158 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 ALDH7A1P49419 539 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 EFNA5P52803 228 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 PLCB3Q01970 1234 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 DNM1Q05193 864 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 CLUL1Q15846 466 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 ATF7IP2Q5U623 682 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms