RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 A0A1B0GUA9 196 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 CHMP2AO43633 222 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 RTN2O75298 545 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 SLC9A9Q8IVB4 645 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 IGLV3-22A0A075B6J6 115 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 ANKRD63C9JTQ0 380 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 F5H6K3 240 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 ZBTB39O15060 712 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 CLNS1AP54105 237 aaKnown RBP18.86■□□□□ 0.61
SYNE3-202ENST00000553340 SHROOM1Q2M3G4 852 aaPredicted RBP18.86■□□□□ 0.61
SYNE3-202ENST00000553340 SYDE2Q5VT97 1194 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 LRCH2Q5VUJ6 765 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 AGAP1Q9UPQ3 857 aa18.86■□□□□ 0.61
SYNE3-202ENST00000553340 FAM196BA6NMK8 535 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 MTA2O94776 668 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 UBOX5O94941 541 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 OAS1P00973 400 aaKnown RBP18.85■□□□□ 0.61
SYNE3-202ENST00000553340 ICA1Q05084 483 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 ZNF268Q14587 947 aaPredicted RBP18.85■□□□□ 0.61
SYNE3-202ENST00000553340 CRYMQ14894 314 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 GBP7Q8N8V2 638 aaPredicted RBP18.85■□□□□ 0.61
SYNE3-202ENST00000553340 TEKT1Q969V4 418 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 RSRC1Q96IZ7 334 aaKnown RBP18.85■□□□□ 0.61
SYNE3-202ENST00000553340 KCND2Q9NZV8 630 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 BTAF1O14981 1849 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 TCRBV7S2A1N4TA0A589 114 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 SPOPO43791 374 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 SUN1O94901 812 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 ATP5DP30049 168 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 APOBEC3HQ6NTF7 200 aaKnown RBP18.85■□□□□ 0.61
SYNE3-202ENST00000553340 ZNF746Q6NUN9 644 aaPredicted RBP18.85■□□□□ 0.61
SYNE3-202ENST00000553340 HHIPL2Q6UWX4 724 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 ZFPM1Q8IX07 1006 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 ARHGEF2Q92974 986 aaKnown RBP18.85■□□□□ 0.61
SYNE3-202ENST00000553340 CD101Q93033 1021 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 EBF2Q9HAK2 575 aa18.85■□□□□ 0.61
SYNE3-202ENST00000553340 ECEL1O95672 775 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 RPSAP08865 295 aaKnown RBP18.84■□□□□ 0.61
SYNE3-202ENST00000553340 RARAP10276 462 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 NQO1P15559 274 aaKnown RBP18.84■□□□□ 0.61
SYNE3-202ENST00000553340 KCNJ1P48048 391 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 MYBPC2Q14324 1141 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 LRRC14Q15048 493 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 LONRF1Q17RB8 773 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 SLC30A10Q6XR72 485 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 FAM196AQ6ZSG2 479 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 SERPINB12Q96P63 405 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 NACC1Q96RE7 527 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 EMSYQ7Z589 1322 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 TCP11X1B4DZS4 312 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 PSMD10O75832 226 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 SCP2P22307 547 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 PPP2R5CQ13362 524 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 INTS8Q75QN2 995 aaKnown RBP18.84■□□□□ 0.61
SYNE3-202ENST00000553340 SIAH1Q8IUQ4 282 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 ARHGEF19Q8IW93 802 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 C12orf50Q8NA57 414 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-202ENST00000553340 MGARPQ8TDB4 240 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 CDC42EP4Q9H3Q1 356 aaKnown RBP18.84■□□□□ 0.61
SYNE3-202ENST00000553340 FGFR1OP2Q9NVK5 253 aa18.84■□□□□ 0.61
SYNE3-202ENST00000553340 CHORDC1Q9UHD1 332 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-202ENST00000553340 TMEM120BA0PK00 339 aa18.83■□□□□ 0.61
SYNE3-202ENST00000553340 SERPINB2P05120 415 aa18.83■□□□□ 0.61
SYNE3-202ENST00000553340 GZMAP12544 262 aa18.83■□□□□ 0.61
SYNE3-202ENST00000553340 TAL1P17542 331 aaPredicted RBP18.83■□□□□ 0.61
SYNE3-202ENST00000553340 HOXA10P31260 410 aaPredicted RBP18.83■□□□□ 0.61
SYNE3-202ENST00000553340 NCALDP61601 193 aa18.83■□□□□ 0.61
SYNE3-202ENST00000553340 ACCSLQ4AC99 568 aa18.83■□□□□ 0.61
SYNE3-202ENST00000553340 MIGA2Q7L4E1 593 aa18.83■□□□□ 0.61
SYNE3-202ENST00000553340 STAMBPL1Q96FJ0 436 aa18.83■□□□□ 0.61
SYNE3-202ENST00000553340 GMCL1Q96IK5 515 aa18.83■□□□□ 0.61
SYNE3-202ENST00000553340 PIK3CDO00329 1044 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 P4HA2O15460 535 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 MUTP22033 750 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 PRELPP51888 382 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 DLG4P78352 724 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 MAP2K1Q02750 393 aaPredicted RBP18.83■□□□□ 0.6
SYNE3-202ENST00000553340 QSER1Q2KHR3 1735 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 ZNF568Q3ZCX4 644 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 OTUD6AQ7L8S5 288 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 GMCL1P1Q8NEA9 526 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 WDR18Q9BV38 432 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 ECT2Q9H8V3 914 aa18.83■□□□□ 0.6
SYNE3-202ENST00000553340 ACSL3O95573 720 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 NDUFB10O96000 172 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 VAMP7P51809 220 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 RWDD2BP57060 319 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 KCNJ2P63252 427 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 SIX1Q15475 284 aaPredicted RBP18.82■□□□□ 0.6
SYNE3-202ENST00000553340 GALNTL6Q49A17 601 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 NUGGCQ68CJ6 796 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 RNF207Q6ZRF8 634 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 CRAMP1Q96RY5 1269 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 PLCD4Q9BRC7 762 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 DDX23Q9BUQ8 820 aaKnown RBP18.82■□□□□ 0.6
SYNE3-202ENST00000553340 ZC3H12CQ9C0D7 883 aaKnown RBP18.82■□□□□ 0.6
SYNE3-202ENST00000553340 LRRC19Q9H756 370 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 WHRNQ9P202 907 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 PI4KBQ9UBF8 816 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 GGT7Q9UJ14 662 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms