RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 IRF6O14896 467 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 CFHP08603 1231 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 BCRP11274 1271 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TMOD1P28289 359 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ADSSP30520 456 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 HNRNPH3P31942 346 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 PSMC4P43686 418 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 MMP14P50281 582 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 WNT7BP56706 349 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TFAMQ00059 246 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 PPATQ06203 517 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 IFFO1Q0D2I5 559 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TMEM62Q0P6H9 643 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 SYCP2LQ5T4T6 812 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 SV2AQ7L0J3 742 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 NOP9Q86U38 636 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 SULF1Q8IWU6 871 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 IFT20Q8IY31 132 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 MOV10L1Q9BXT6 1211 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 STK33Q9BYT3 514 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 KIAA1683Q9H0B3 1180 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 NUCKS1Q9H1E3 243 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 PPANQ9NQ55 473 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 OLFML3Q9NRN5 406 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TBC1D22BQ9NU19 505 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TBX20Q9UMR3 447 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 COG5Q9UP83 839 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 UBIAD1Q9Y5Z9 338 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ALG6Q9Y672 507 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 DNAH12Q6ZR08 3092 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 FRMPD4Q14CM0 1322 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 INO80B-WBP1J3KQ70 363 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 K7ERI5 159 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 NOP56O00567 594 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TRIM66O15016 1216 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 RGS20O76081 388 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 GGPS1O95749 300 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 SYF2O95926 243 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 CYP2C8P10632 490 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 CD19P15391 556 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 NLRP11P59045 1033 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 GNGT1P63211 74 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TNNC1P63316 161 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 SEMA3FQ13275 785 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TUBB2AQ13885 445 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 MEI1Q5TIA1 1274 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TMEM270Q6UE05 265 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 CEP120Q8N960 986 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 FAM76AQ8TAV0 307 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 MAGOHBQ96A72 148 aaKnown RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 KREMEN1Q96MU8 473 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ZIM3Q96PE6 472 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TUBB2BQ9BVA1 445 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 INO80BQ9C086 356 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 MLXIPLQ9NP71 852 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 FBXO40Q9UH90 709 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TRPC6Q9Y210 931 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 PCDHB4Q9Y5E5 795 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 CSADQ9Y600 493 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 FOXO6A8MYZ6 492 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 GOLGA8SH3BPF8 625 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 WEE2P0C1S8 567 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 HSD17B4P51659 736 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ERVK-9P63128 1117 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 CDK17Q00537 523 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 STRN3Q13033 797 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 VGLL4Q14135 290 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 OTUD6AQ7L8S5 288 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 VSIG10LQ86VR7 867 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 FBXO16Q8IX29 292 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-215ENST00000552823 CCDC105Q8IYK2 499 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 USP38Q8NB14 1042 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ATG4AQ8WYN0 398 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ALG3Q92685 438 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 PWWP2AQ96N64 755 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 NT5C1BQ96P26 610 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 TEX13BQ9BXU2 312 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 NEUROG2Q9H2A3 272 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ACAD9Q9H845 621 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 AS3MTQ9HBK9 375 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ERVK-5Q9HDB9 667 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 UMODL1Q5DID0 1318 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 PGRMC1O00264 195 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 COMTP21964 271 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 FGFR4P22455 802 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 BRD2P25440 801 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 HMGB2P26583 209 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 DSG3P32926 999 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CYP2C19P33261 490 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 TNFSF9P41273 254 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 PIK3CAP42336 1068 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CCT5P48643 541 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 GUCY1A3Q02108 690 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CCDC38Q502W7 563 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 PCNX4Q63HM2 1172 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 MCTP2Q6DN12 878 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 INTS8Q75QN2 995 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 RHPN2Q8IUC4 686 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 TXLNBQ8N3L3 684 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 ASAP3Q8TDY4 903 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms