RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 INPP5FQ9Y2H2 1132 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 PCDHA10Q9Y5I2 948 aa11.85□□□□□ -0.51
VPS29-208ENST00000550267 VPS13AQ96RL7 3174 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 MEIS3P2A8K0S8 358 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 ZNF862O60290 1169 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 B4GALT3O60512 393 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 N4BP1O75113 896 aaKnown RBP11.84□□□□□ -0.51
VPS29-208ENST00000550267 SSBP05455 408 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS29-208ENST00000550267 CNPP09543 421 aaKnown RBP11.84□□□□□ -0.51
VPS29-208ENST00000550267 RFX1P22670 979 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 KLRC2P26717 231 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 PHKA2P46019 1235 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 SLC11A1P49279 550 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 CLCN4P51793 760 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 PUM1Q14671 1186 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS29-208ENST00000550267 LETM2Q2VYF4 491 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 NOMO2Q5JPE7 1267 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 TEX2Q8IWB9 1127 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 SMAP1Q8IYB5 467 aaPredicted RBP11.84□□□□□ -0.51
VPS29-208ENST00000550267 FAM167AQ96KS9 214 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 HINFPQ9BQA5 517 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 TBC1D22BQ9NU19 505 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 TBC1D13Q9NVG8 400 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 BARHL2Q9NY43 387 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 WNT16Q9UBV4 365 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 TCEAL9Q9UHQ7 104 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 SAMM50Q9Y512 469 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 EVPLQ92817 2033 aa11.84□□□□□ -0.51
VPS29-208ENST00000550267 MYO10Q9HD67 2058 aa11.83□□□□□ -0.51
VPS29-208ENST00000550267 DNAH14Q0VDD8 3507 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 SLC27A2O14975 620 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 ADAMTS3O15072 1205 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 KRT37O76014 449 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 DCNP07585 359 aaKnown RBP11.83□□□□□ -0.52
VPS29-208ENST00000550267 CYP3A4P08684 503 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 GBP2P32456 591 aaPredicted RBP11.83□□□□□ -0.52
VPS29-208ENST00000550267 PRKCEQ02156 737 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 RNASELQ05823 741 aaKnown RBP11.83□□□□□ -0.52
VPS29-208ENST00000550267 DRP2Q13474 957 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 SPECC1Q5M775 1068 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 GLB1LQ6UWU2 654 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 SYNE3Q6ZMZ3 975 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 C15orf39Q6ZRI6 1047 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 SGMS1Q86VZ5 419 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 ZNF280BQ86YH2 543 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 DCLK2Q8N568 766 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 EXOC6Q8TAG9 804 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 CRYGNQ8WXF5 182 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 EMILIN2Q9BXX0 1053 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 TBC1D17Q9HA65 648 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 NRBP2Q9NSY0 501 aa11.83□□□□□ -0.52
VPS29-208ENST00000550267 RBM28Q9NW13 759 aaKnown RBP11.83□□□□□ -0.52
VPS29-208ENST00000550267 PTPRZ1P23471 2315 aaPredicted RBP11.82□□□□□ -0.52
VPS29-208ENST00000550267 hCG_1984214I3L0E3 225 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 LILRB3O75022 631 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 OFD1O75665 1012 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 MYBP10242 640 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 SETQ01105 290 aaPredicted RBP11.82□□□□□ -0.52
VPS29-208ENST00000550267 TBC1D8BQ0IIM8 1120 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 UGCGQ16739 394 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 TWF2Q6IBS0 349 aaKnown RBP11.82□□□□□ -0.52
VPS29-208ENST00000550267 APOA5Q6Q788 366 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 SLC44A3Q8N4M1 653 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 ZNF713Q8N859 430 aaPredicted RBP11.82□□□□□ -0.52
VPS29-208ENST00000550267 MYADMQ96S97 322 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 GCOM2Q9BZD3 368 aaPredicted RBP11.82□□□□□ -0.52
VPS29-208ENST00000550267 GLT8D2Q9H1C3 349 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 MAN1C1Q9NR34 630 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 CHST12Q9NRB3 414 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 FAM105AQ9NUU6 356 aa11.82□□□□□ -0.52
VPS29-208ENST00000550267 PIN4Q9Y237 131 aaKnown RBP11.82□□□□□ -0.52
VPS29-208ENST00000550267 FAM186AA6NE01 2351 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 A0A087WZ62 844 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 CCDC195A0A1B0GUA6 201 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 CARNS1A5YM72 827 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 WDR64B1ANS9 1081 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 DDHD2O94830 711 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 SP9P0CG40 484 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 KCNH2Q12809 1159 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 RTN1Q16799 776 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 PRR16Q569H4 304 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 CMASQ8NFW8 434 aaPredicted RBP11.81□□□□□ -0.52
VPS29-208ENST00000550267 GPR152Q8TDT2 470 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 RSPH1Q8WYR4 309 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 RUBCNQ92622 972 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 CNTNAP3BQ96NU0 1288 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 FDXACB1Q9BRP7 624 aaPredicted RBP11.81□□□□□ -0.52
VPS29-208ENST00000550267 TRAIPQ9BWF2 469 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 CNTNAP3Q9BZ76 1288 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 LSG1Q9H089 658 aaKnown RBP11.81□□□□□ -0.52
VPS29-208ENST00000550267 WDR6Q9NNW5 1121 aaKnown RBP11.81□□□□□ -0.52
VPS29-208ENST00000550267 DLL3Q9NYJ7 618 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 DLGAP2Q9P1A6 1054 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 BRPF3Q9ULD4 1205 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 CLUHO75153 1309 aa11.81□□□□□ -0.52
VPS29-208ENST00000550267 C2orf16Q68DN1 1984 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 C2CD2LO14523 706 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 INPPL1O15357 1258 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 SRFP11831 508 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 SKIP12755 728 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms