RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	NBPF20	Q3BBV1	942 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	GAS2L3	Q86XJ1	694 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	SMYD4	Q8IYR2	804 aa	Predicted RBP	10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	SYCP3	Q8IZU3	236 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	LINC01465	Q8N7H1	131 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	RNF214	Q8ND24	703 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	TMEM161B	Q8NDZ6	487 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	SCFD1	Q8WVM8	642 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	TRAPPC12	Q8WVT3	735 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	STRA6	Q9BX79	667 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	NFKBIZ	Q9BYH8	718 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	GBP3	Q9H0R5	595 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	RBSN	Q9H1K0	784 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	KCNH6	Q9H252	994 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	TMEM134	Q9H6X4	195 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	TYW1	Q9NV66	732 aa	Known RBP	10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	SETD4	Q9NVD3	440 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	ARHGAP28	Q9P2N2	729 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	HDAC6	Q9UBN7	1215 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	GTF2IRD1	Q9UHL9	959 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	SCN10A	Q9Y5Y9	1956 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	CFAP54	Q96N23	3096 aa		10.44	□□□□□ -0.74
YBX3-215	ENST00000544504	DENND3	A2RUS2	1198 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	ZBBX	A8MT70	800 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504		K7ERI5	159 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504		M0QZ92	97 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	KIAA0391	O15091	583 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	SLC16A4	O15374	487 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	PPP1R37	O75864	691 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	GNA14	O95837	355 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	MYB	P10242	640 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	CD44	P16070	742 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	NMT1	P30419	496 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	CCL23	P55773	120 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	ADAM17	P78536	824 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	FKBP3	Q00688	224 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	ITGA7	Q13683	1181 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	NFIL3	Q16649	462 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	FAM47C	Q5HY64	1035 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	MARCH8	Q5T0T0	291 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	LUZP1	Q86V48	1076 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	RHPN2	Q8IUC4	686 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	LRRC71	Q8N4P6	559 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	HPS3	Q969F9	1004 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	CEP63	Q96MT8	703 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	FIZ1	Q96SL8	496 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	INO80B	Q9C086	356 aa	Predicted RBP	10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	THAP9	Q9H5L6	903 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	GRPEL1	Q9HAV7	217 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	CD320	Q9NPF0	282 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	MAGEC2	Q9UBF1	373 aa	Predicted RBP	10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	TBX20	Q9UMR3	447 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	MAPK8IP1	Q9UQF2	711 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	TRAF3IP3	Q9Y228	551 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	AKT3	Q9Y243	479 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	NFE2L3	Q9Y4A8	694 aa		10.43	□□□□□ -0.74
YBX3-215	ENST00000544504	UMODL1	Q5DID0	1318 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CETN3	O15182	167 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CAND2	O75155	1236 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	PRPF6	O94906	941 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	TPM3	P06753	285 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	TPM2	P07951	284 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	PFKM	P08237	780 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	ALAD	P13716	330 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CDK11B	P21127	795 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CLCN3	P51790	818 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	STX17	P56962	302 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	IRX5	P78411	483 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	NCBP1	Q09161	790 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CAPS	Q13938	189 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	MAPK6	Q16659	721 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	ZCWPW2	Q504Y3	356 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CDCA2	Q69YH5	1023 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	SLFN12L	Q6IEE8	588 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	TTI2	Q6NXR4	508 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	FAM43B	Q6ZT52	329 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	SRGAP1	Q7Z6B7	1085 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	RPAIN	Q86UA6	219 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	MAP4K3	Q8IVH8	894 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	DHX40	Q8IX18	779 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	NELFCD	Q8IXH7	590 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	C12orf56	Q8IXR9	622 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	KIAA0319L	Q8IZA0	1049 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CSGALNACT2	Q8N6G5	542 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	SLC43A3	Q8NBI5	491 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	RNF149	Q8NC42	400 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	ASAP3	Q8TDY4	903 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	TMEM174	Q8WUU8	243 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	BSND	Q8WZ55	320 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	PRIMPOL	Q96LW4	560 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	SCLT1	Q96NL6	688 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CTAGE1	Q96RT6	745 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	NOC4L	Q9BVI4	516 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	KCTD10	Q9H3F6	313 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	CERS4	Q9HA82	394 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	POLD4	Q9HCU8	107 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	NOD1	Q9Y239	953 aa		10.42	□□□□□ -0.74
YBX3-215	ENST00000544504	C5orf42	Q9H799	3197 aa		10.42	□□□□□ -0.74

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