RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-223ENST00000543658 RFC2P35250 354 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 CCL23P55773 120 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 MYL5Q02045 173 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 KCNA1Q09470 495 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 EDRF1Q3B7T1 1238 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 CENPPQ6IPU0 288 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 FAM228AQ86W67 206 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 TMEM199Q8N511 208 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 AOPEPQ8N6M6 819 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 FAM200AQ8TCP9 573 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 TMEM40Q8WWA1 233 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 CPB2Q96IY4 423 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 ACO2Q99798 780 aaKnown RBP13.01□□□□□ -0.33
DDB1-223ENST00000543658 BPIFA3Q9BQP9 254 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 IFIH1Q9BYX4 1025 aaKnown RBP13.01□□□□□ -0.33
DDB1-223ENST00000543658 KCTD10Q9H3F6 313 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 AGPAT5Q9NUQ2 364 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 TRAF3IP3Q9Y228 551 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 TNFSF13BQ9Y275 285 aa13.01□□□□□ -0.33
DDB1-223ENST00000543658 TRIP11Q15643 1979 aa13□□□□□ -0.33
DDB1-223ENST00000543658 UMODL1Q5DID0 1318 aa13□□□□□ -0.33
DDB1-223ENST00000543658 KIAA0391O15091 583 aaKnown RBP13□□□□□ -0.33
DDB1-223ENST00000543658 CETN3O15182 167 aa13□□□□□ -0.33
DDB1-223ENST00000543658 CLIC2O15247 247 aa13□□□□□ -0.33
DDB1-223ENST00000543658 B4GALT5O43286 388 aa13□□□□□ -0.33
DDB1-223ENST00000543658 TOM1L1O75674 476 aa13□□□□□ -0.33
DDB1-223ENST00000543658 TIMP1P01033 207 aa13□□□□□ -0.33
DDB1-223ENST00000543658 NR3C1P04150 777 aa13□□□□□ -0.33
DDB1-223ENST00000543658 ARF4P18085 180 aaPredicted RBP13□□□□□ -0.33
DDB1-223ENST00000543658 GARTP22102 1010 aa13□□□□□ -0.33
DDB1-223ENST00000543658 NR2F2P24468 414 aa13□□□□□ -0.33
DDB1-223ENST00000543658 CYP2C18P33260 490 aa13□□□□□ -0.33
DDB1-223ENST00000543658 FKBP3Q00688 224 aaKnown RBP13□□□□□ -0.33
DDB1-223ENST00000543658 LPIN1Q14693 890 aa13□□□□□ -0.33
DDB1-223ENST00000543658 NOLC1Q14978 699 aaKnown RBP eCLIP13□□□□□ -0.333e-6■□□□□ 10.5
DDB1-223ENST00000543658 DCAF4L1Q3SXM0 396 aa13□□□□□ -0.33
DDB1-223ENST00000543658 ANKRD40Q6AI12 368 aa13□□□□□ -0.33
DDB1-223ENST00000543658 TWF2Q6IBS0 349 aaKnown RBP13□□□□□ -0.33
DDB1-223ENST00000543658 SLC27A1Q6PCB7 646 aa13□□□□□ -0.33
DDB1-223ENST00000543658 MPZL3Q6UWV2 235 aa13□□□□□ -0.33
DDB1-223ENST00000543658 ZBTB33Q86T24 672 aa13□□□□□ -0.33
DDB1-223ENST00000543658 FAM114A1Q8IWE2 563 aa13□□□□□ -0.33
DDB1-223ENST00000543658 CSGALNACT2Q8N6G5 542 aa13□□□□□ -0.33
DDB1-223ENST00000543658 SEPT8Q92599 483 aa13□□□□□ -0.33
DDB1-223ENST00000543658 DPF3Q92784 378 aa13□□□□□ -0.33
DDB1-223ENST00000543658 APBB2Q92870 758 aa13□□□□□ -0.33
DDB1-223ENST00000543658 CCDC51Q96ER9 411 aa13□□□□□ -0.33
DDB1-223ENST00000543658 SCLYQ96I15 445 aa13□□□□□ -0.33
DDB1-223ENST00000543658 MSTO1Q9BUK6 570 aa13□□□□□ -0.33
DDB1-223ENST00000543658 SEMA6BQ9H3T3 888 aa13□□□□□ -0.33
DDB1-223ENST00000543658 AGPAT3Q9NRZ7 376 aa13□□□□□ -0.33
DDB1-223ENST00000543658 MAGEC2Q9UBF1 373 aaPredicted RBP13□□□□□ -0.33
DDB1-223ENST00000543658 ST3GAL5Q9UNP4 418 aa13□□□□□ -0.33
DDB1-223ENST00000543658 FRMD4BQ9Y2L6 1034 aa13□□□□□ -0.33
DDB1-223ENST00000543658 TDRD15B5MCY1 1934 aaKnown RBP13□□□□□ -0.33
DDB1-223ENST00000543658 ANK1P16157 1881 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 PDCD11Q14690 1871 aaKnown RBP12.99□□□□□ -0.33
DDB1-223ENST00000543658 TULP1O00294 542 aaPredicted RBP12.99□□□□□ -0.33
DDB1-223ENST00000543658 KIAA0355O15063 1070 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 EXOC3O60645 756 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 LDHAP00338 332 aaKnown RBP12.99□□□□□ -0.33
DDB1-223ENST00000543658 EPB41P11171 864 aaKnown RBP12.99□□□□□ -0.33
DDB1-223ENST00000543658 CYP2J2P51589 502 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 ADAM9Q13443 819 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 AMHR2Q16671 573 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 KYAT1Q16773 422 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 SPATA1Q5VX52 437 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 CEP135Q66GS9 1140 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 FOXR2Q6PJQ5 311 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 FAM43BQ6ZT52 329 aaPredicted RBP12.99□□□□□ -0.33
DDB1-223ENST00000543658 HACE1Q8IYU2 909 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 ANKRD20A12PQ8NF67 263 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 ENOX1Q8TC92 643 aaKnown RBP12.99□□□□□ -0.33
DDB1-223ENST00000543658 FTHL17Q9BXU8 183 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 PCIF1Q9H4Z3 704 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 PDZD7Q9H5P4 517 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 ERVK-5Q9HDB9 667 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 CHST12Q9NRB3 414 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 PADI3Q9ULW8 664 aa12.99□□□□□ -0.33
DDB1-223ENST00000543658 TET1Q8NFU7 2136 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 ANKRD63C9JTQ0 380 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 IKBKBO14920 756 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 TGFB1I1O43294 461 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 NPTXRO95502 500 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 TPM2P07951 284 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 MCF2P10911 925 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 SKIP12755 728 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 HOXD13P35453 343 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 PMS1P54277 932 aaKnown RBP12.98□□□□□ -0.33
DDB1-223ENST00000543658 MYBPC2Q14324 1141 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 NFIL3Q16649 462 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 CCDC40Q4G0X9 1142 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 ZCWPW2Q504Y3 356 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 TTI2Q6NXR4 508 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 TRAF7Q6Q0C0 670 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 DEFB128Q7Z7B8 93 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 CDR2LQ86X02 465 aaPredicted RBP12.98□□□□□ -0.33
DDB1-223ENST00000543658 CREBRFQ8IUR6 639 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 C12orf56Q8IXR9 622 aa12.98□□□□□ -0.33
DDB1-223ENST00000543658 RPUSD2Q8IZ73 545 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms