RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TRIM49P0CI25 452 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 TRIM49CP0CI26 452 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 ATP5DP30049 168 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 SCNN1DP51172 638 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 PDE4CQ08493 712 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 ZNF211Q13398 564 aaPredicted RBP14.77□□□□□ -0.04
VPS33A-208ENST00000543633 RIPK1Q13546 671 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 SLC29A2Q14542 456 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 COG2Q14746 738 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 EPC2Q52LR7 807 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 ODR4Q5SWX8 454 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 ATRNL1Q5VV63 1379 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 CCDC137Q6PK04 289 aaKnown RBP14.77□□□□□ -0.04
VPS33A-208ENST00000543633 TPH2Q8IWU9 490 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 MDM1Q8TC05 714 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 PIGOQ8TEQ8 1089 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 C18orf8Q96DM3 657 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 AZI2Q9H6S1 392 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 TMEM206Q9H813 350 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 HOMER3Q9NSC5 361 aa14.77□□□□□ -0.04
VPS33A-208ENST00000543633 SEPT11Q9NVA2 429 aaKnown RBP14.77□□□□□ -0.04
VPS33A-208ENST00000543633 TPX2Q9ULW0 747 aaKnown RBP14.77□□□□□ -0.04
VPS33A-208ENST00000543633 FOXN3O00409 490 aaPredicted RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 RIMBP2O15034 1052 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 RAD21O60216 631 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 FTLP02792 175 aaPredicted RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 EZRP15311 586 aaKnown RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 POLD1P28340 1107 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 COILP38432 576 aaPredicted RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 ARHGAP44Q17R89 818 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 ABCB5Q2M3G0 1257 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 ZNF568Q3ZCX4 644 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 B3GNT9Q6UX72 402 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 CRELD2Q6UXH1 353 aaPredicted RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 SYDE1Q6ZW31 735 aaPredicted RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 PALB2Q86YC2 1186 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 PLCD4Q9BRC7 762 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 PLVAPQ9BX97 442 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 LRRC4CQ9HCJ2 640 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 TMOD4Q9NZQ9 345 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 UVRAGQ9P2Y5 699 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 GOLGB1Q14789 3259 aaKnown RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 SFI1A8K8P3 1242 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 RASGRF2O14827 1237 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 GAS7O60861 476 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 MAN1A1P33908 653 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 PDE6CP51160 858 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 IKQ13123 557 aaPredicted RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 SLC13A5Q86YT5 568 aaPredicted RBP14.76□□□□□ -0.05
VPS33A-208ENST00000543633 GIMAP7Q8NHV1 300 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 CCHCR1Q8TD31 782 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 MASTLQ96GX5 879 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 BCAS3Q9H6U6 928 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 WHRNQ9P202 907 aa14.76□□□□□ -0.05
VPS33A-208ENST00000543633 OAS1P00973 400 aaKnown RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 CYP1A2P05177 515 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 TTC27Q6P3X3 843 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 ZFPM1Q8IX07 1006 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 LRRC34Q8IZ02 419 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 SYCP3Q8IZU3 236 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 GBP7Q8N8V2 638 aaPredicted RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 CYP2W1Q8TAV3 490 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 MAIP1Q8WWC4 291 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 KRT35Q92764 455 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 SERPINB12Q96P63 405 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 SEMA4AQ9H3S1 761 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 LRRC19Q9H756 370 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 ATP6V0A4Q9HBG4 840 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 FAM198AQ9UFP1 575 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 GTF3C4Q9UKN8 822 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 EMSYQ7Z589 1322 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 ARHGEF35A5YM69 484 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 DDTLA6NHG4 134 aaPredicted RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 COMTP21964 271 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 ALDH1B1P30837 517 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 HOXA13P31271 388 aaPredicted RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 VAMP7P51809 220 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 ELF3P78545 371 aaPredicted RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 AUHQ13825 339 aaKnown RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 CNGA2Q16280 664 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 TRPM8Q7Z2W7 1104 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 ADAT2Q7Z6V5 191 aaKnown RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 RPUSD2Q8IZ73 545 aaKnown RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 SLC20A1Q8WUM9 679 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 TEKT3Q9BXF9 490 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 UBE2TQ9NPD8 197 aaPredicted RBP14.75□□□□□ -0.05
VPS33A-208ENST00000543633 PRR12Q9ULL5 1215 aa14.75□□□□□ -0.05
VPS33A-208ENST00000543633 BACH1O14867 736 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 LRRN2O75325 713 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 ECEL1O95672 775 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 NF2P35240 595 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 COPB2P35606 906 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 CALCOCO2Q13137 446 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 SIX1Q15475 284 aaPredicted RBP14.74□□□□□ -0.05
VPS33A-208ENST00000543633 PODNQ7Z5L7 613 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 FAM228AQ86W67 206 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 FAM71AQ8IYT1 594 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 CCDC63Q8NA47 563 aa14.74□□□□□ -0.05
VPS33A-208ENST00000543633 EPS8L1Q8TE68 723 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms