RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 RAB20Q9NX57 234 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 AGO2Q9UKV8 859 aaKnown RBP11.6□□□□□ -0.55
CLIP1-213ENST00000540338 IGSF9BQ9UPX0 1349 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 NKRFO15226 690 aaKnown RBP eCLIP11.6□□□□□ -0.55
CLIP1-213ENST00000540338 CD19P15391 556 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 PTPRAP18433 802 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 PLCB3Q01970 1234 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 CBWD6Q4V339 395 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 CBWD3Q5JTY5 395 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 CBWD5Q5RIA9 395 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 CBWD2Q8IUF1 395 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 FAM167AQ96KS9 214 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 TAF1DQ9H5J8 278 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-213ENST00000540338 SLITRK6Q9H5Y7 841 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 CNOT8Q9UFF9 292 aaKnown RBP11.6□□□□□ -0.55
CLIP1-213ENST00000540338 PCDHGC5Q9Y5F6 944 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 SYNGAP1Q96PV0 1343 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 A0A0A6YYK5 440 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 TMEM150BA6NC51 233 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 SMIM23A6NLE4 172 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 MAP2K7O14733 419 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 SART1O43290 800 aaKnown RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 KRT19P08727 400 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 TMEM191BP0C7N4 346 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 GNGT1P63211 74 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 DR1Q01658 176 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 ZNF365Q70YC5 407 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 VSIG10LQ86VR7 867 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 HOOK3Q86VS8 718 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 CRYGNQ8WXF5 182 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 CNTNAP1P78357 1384 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 LRRIQ3A6PVS8 624 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 DDX3XO00571 662 aaKnown RBP eCLIP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 CLDN3O15551 220 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 GAS8O95995 478 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 TNNC2P02585 160 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 GBP1P32455 592 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 ZNF131P52739 623 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 YWHAEP62258 255 aaKnown RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 ITGB3BPQ13352 177 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 DGKZQ13574 1117 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 TFDP1Q14186 410 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 TMEM143Q96AN5 459 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 RUNDC3BQ96NL0 473 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 DNAI2Q9GZS0 605 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 CYP26B1Q9NR63 512 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 KIAA0391O15091 583 aaKnown RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 BUB1BO60566 1050 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 SRGAP2CP0DJJ0 459 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 ZNF211Q13398 564 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 EMC2Q15006 297 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 NFIL3Q16649 462 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 CROCCP2Q86T23 111 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 DNAAF5Q86Y56 855 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 MORC4Q8TE76 937 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 CCDC77Q9BR77 488 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 IKZF4Q9H2S9 585 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 ZNF408Q9H9D4 720 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 COL20A1Q9P218 1284 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 INO80B-WBP1J3KQ70 363 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 NDUFAB1O14561 156 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 CYP2C19P33261 490 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 ATP1A2P50993 1020 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 STAT5BP51692 787 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 RWDD2BP57060 319 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 ZBTB33Q86T24 672 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 ZNF564Q8TBZ8 553 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 CLEC4DQ8WXI8 215 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 OTUD5Q96G74 571 aa11.59□□□□□ -0.55
CLIP1-213ENST00000540338 RNPC3Q96LT9 517 aaKnown RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 INO80BQ9C086 356 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-213ENST00000540338 THAP12O43422 761 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 LYPLA2O95372 231 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 MARK3P27448 753 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 DHX9Q08211 1270 aaKnown RBP11.58□□□□□ -0.56
CLIP1-213ENST00000540338 NNTQ13423 1086 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 DENND2CQ68D51 928 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 DHX37Q8IY37 1157 aaKnown RBP11.58□□□□□ -0.56
CLIP1-213ENST00000540338 TCP11Q8WWU5 503 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.58□□□□□ -0.565e-7■■■■■ 48.1
CLIP1-213ENST00000540338 NUP85Q9BW27 656 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 AMACRQ9UHK6 382 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 ATP9AO75110 1047 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 CARSP49589 748 aaKnown RBP11.58□□□□□ -0.56
CLIP1-213ENST00000540338 MRPS9P82933 396 aaKnown RBP11.58□□□□□ -0.56
CLIP1-213ENST00000540338 EAPPQ56P03 285 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-213ENST00000540338 PPP1R2P3Q6NXS1 205 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 DPH6Q7L8W6 267 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 THAP2Q9H0W7 228 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 MRPL47Q9HD33 250 aaKnown RBP11.58□□□□□ -0.56
CLIP1-213ENST00000540338 RBAKQ9NYW8 714 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-213ENST00000540338 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-213ENST00000540338 PASKQ96RG2 1323 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 RAD51CO43502 376 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 PLTPP55058 493 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 RABEP2Q9H5N1 569 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 PPP2R3BQ9Y5P8 575 aa11.58□□□□□ -0.56
CLIP1-213ENST00000540338 H3BQF6 201 aa11.57□□□□□ -0.56
CLIP1-213ENST00000540338 GTF2BQ00403 316 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms