RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 MEIS1O00470 390 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 BACH1O14867 736 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 IKBKBO14920 756 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 GPR32O75388 356 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 C22orf31O95567 290 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 CEP55Q53EZ4 464 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 PPP1R18Q6NYC8 613 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 TMTC3Q6ZXV5 915 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 HEATR3Q7Z4Q2 680 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 CCAR2Q8N163 923 aaKnown RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 SLC39A11Q8N1S5 342 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 PLCD3Q8N3E9 789 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 MRPL43Q8N983 215 aaKnown RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 TDRD5Q8NAT2 981 aaKnown RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 UBE2Q2Q8WVN8 375 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 NKD2Q969F2 451 aaPredicted RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 EPSTI1Q96J88 318 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 OSMRQ99650 979 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 PHF20Q9BVI0 1012 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 RNF26Q9BY78 433 aaPredicted RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 RIC8AQ9NPQ8 531 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 ZNF302Q9NR11 478 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 MAN1B1Q9UKM7 699 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 HCFC2Q9Y5Z7 792 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 ACTN4O43707 911 aaKnown RBP9.12□□□□□ -0.95
NEDD8-207ENST00000533242 CCNE2O96020 404 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 NCBP1Q09161 790 aaKnown RBP9.12□□□□□ -0.95
NEDD8-207ENST00000533242 BMS1Q14692 1282 aaKnown RBP9.12□□□□□ -0.95
NEDD8-207ENST00000533242 SAFBQ15424 915 aaKnown RBP eCLIP9.12□□□□□ -0.95
NEDD8-207ENST00000533242 KIZQ2M2Z5 673 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 RILPL1Q5EBL4 403 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 KIAA1841Q6NSI8 718 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 MIS18BP1Q6P0N0 1132 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 PDXDC2PQ6P474 469 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 FRMD5Q7Z6J6 570 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 ECHDC2Q86YB7 292 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 ABI1Q8IZP0 508 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 BBXQ8WY36 941 aaPredicted RBP9.12□□□□□ -0.95
NEDD8-207ENST00000533242 WASF1Q92558 559 aa9.12□□□□□ -0.95
NEDD8-207ENST00000533242 MYL5Q02045 173 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 POSTNQ15063 836 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 RARS2Q5T160 578 aaKnown RBP9.11□□□□□ -0.95
NEDD8-207ENST00000533242 CEP135Q66GS9 1140 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 CCDC60Q8IWA6 550 aaPredicted RBP9.11□□□□□ -0.95
NEDD8-207ENST00000533242 TNFRSF25Q93038 417 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 PPP1R16BQ96T49 567 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 ANO3Q9BYT9 981 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 MFSD1Q9H3U5 465 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 CDH22Q9UJ99 828 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 USTQ9Y2C2 406 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 CNTNAP5Q8WYK1 1306 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 CCDC196A0A1B0GTZ2 297 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 SMTNL1A8MU46 457 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 DDX39AO00148 427 aaKnown RBP9.11□□□□□ -0.95
NEDD8-207ENST00000533242 FANCGO15287 622 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 MAGEB2O15479 319 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 ZSCAN20P17040 1043 aaPredicted RBP9.11□□□□□ -0.95
NEDD8-207ENST00000533242 ATP4AP20648 1035 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 SREBF1P36956 1147 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 ID4P47928 161 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 ADCY7P51828 1080 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 RCAN1P53805 252 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 AP3B2Q13367 1082 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 ATAT1Q5SQI0 421 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 WWC2Q6AWC2 1192 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 ANKRD7Q92527 254 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 SMOC2Q9H3U7 446 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 SRPRBQ9Y5M8 271 aaKnown RBP9.11□□□□□ -0.95
NEDD8-207ENST00000533242 C2orf16Q68DN1 1984 aa9.11□□□□□ -0.95
NEDD8-207ENST00000533242 CARNS1A5YM72 827 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 PRPF3O43395 683 aaKnown RBP9.1□□□□□ -0.95
NEDD8-207ENST00000533242 NEMFO60524 1076 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 CXCL14O95715 111 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 EOMESO95936 686 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 VTNP04004 478 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 ASGR2P07307 311 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 ZNF76P36508 570 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 PBX3P40426 434 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 NAPAP54920 295 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 UBASH3AP57075 661 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 GIT2Q14161 759 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 CLLU1OSQ5K130 101 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 CWF19L1Q69YN2 538 aaKnown RBP9.1□□□□□ -0.95
NEDD8-207ENST00000533242 SWSAP1Q6NVH7 229 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 ADSSL1Q8N142 457 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 SLC22A17Q8WUG5 538 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 RSPH1Q8WYR4 309 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 MRPL9Q9BYD2 267 aaKnown RBP9.1□□□□□ -0.95
NEDD8-207ENST00000533242 GLT8D2Q9H1C3 349 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 ADAMTS10Q9H324 1103 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 IMPACTQ9P2X3 320 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 LIMD1Q9UGP4 676 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 CEP131Q9UPN4 1083 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 hCG_1984214I3L0E3 225 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 DHX15O43143 795 aaKnown RBP9.1□□□□□ -0.95
NEDD8-207ENST00000533242 POLGP54098 1239 aaPredicted RBP9.1□□□□□ -0.95
NEDD8-207ENST00000533242 GSDMDP57764 484 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 MORC3Q14149 939 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 PTPN14Q15678 1187 aa9.1□□□□□ -0.95
NEDD8-207ENST00000533242 ZNF174Q15697 407 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms