RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 IRAK3Q9Y616 596 aa7.35□□□□□ -1.23
CD44-221ENST00000526000 CYP3A7-CYP3A51PA0A087WV96 503 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 FAM205CA6NFA0 338 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 ARL5CA6NH57 179 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 INO80B-WBP1J3KQ70 363 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 CCNT1O60563 726 aaKnown RBP7.34□□□□□ -1.23
CD44-221ENST00000526000 GLUD1P00367 558 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 SOD2P04179 222 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 LIG1P18858 919 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 CYP3A7P24462 503 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 PSMA5P28066 241 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 MLH1P40692 756 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 RAB27AP51159 221 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 NUBP1P53384 320 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 RCAN1P53805 252 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 TOB2Q14106 344 aaPredicted RBP7.34□□□□□ -1.23
CD44-221ENST00000526000 KIAA0319Q5VV43 1072 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 PRSS55Q6UWB4 352 aaPredicted RBP7.34□□□□□ -1.23
CD44-221ENST00000526000 B3GNT9Q6UX72 402 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 PIK3AP1Q6ZUJ8 805 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 GET4Q7L5D6 327 aaPredicted RBP7.34□□□□□ -1.23
CD44-221ENST00000526000 SRGAP1Q7Z6B7 1085 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 FERMT3Q86UX7 667 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 CEP57Q86XR8 500 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 CCDC105Q8IYK2 499 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 COLGALT2Q8IYK4 626 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 RDM1Q8NG50 284 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 GPR152Q8TDT2 470 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 HASPINQ8TF76 798 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 PSPC1Q8WXF1 523 aaKnown RBP7.34□□□□□ -1.23
CD44-221ENST00000526000 SLC7A3Q8WY07 619 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 KCNB2Q92953 911 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 RTP3Q9BQQ7 232 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 TMEM175Q9BSA9 504 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 TRAIPQ9BWF2 469 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 COLEC11Q9BWP8 271 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 GPR62Q9BZJ7 368 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 FOXQ1Q9C009 403 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 NT5C3AQ9H0P0 336 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 TBC1D17Q9HA65 648 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 POLD4Q9HCU8 107 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 SH3GLB2Q9NR46 395 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 KANSL3Q9P2N6 904 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 POLIQ9UNA4 740 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 DUSP12Q9UNI6 340 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 IPPQ9Y573 584 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 TRIOO75962 3097 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 FAM186AA6NE01 2351 aa7.34□□□□□ -1.23
CD44-221ENST00000526000 MYH9P35579 1960 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 WDFY4Q6ZS81 3184 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 CCDC194A0A1B0GVG4 234 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 M0R2N6 131 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 B4GALT5O43286 388 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 EPB41L2O43491 1005 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 TGM5O43548 720 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 TADA2AO75478 443 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 ERLIN2O94905 339 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 DEXIO95424 95 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 NPTXRO95502 500 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 P4HBP07237 508 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 ADH1AP07327 375 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 NCLP19338 710 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 CD72P21854 359 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 YWHABP31946 246 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 GLUD2P49448 558 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 NCBP1Q09161 790 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 SNW1Q13573 536 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 EMC2Q15006 297 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 EPHA7Q15375 998 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 NPY5RQ15761 445 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 EARS2Q5JPH6 523 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 OTUD6AQ7L8S5 288 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 GRASPQ7Z6J2 395 aaPredicted RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 ASAP3Q8TDY4 903 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 HAS1Q92839 578 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 ZNF707Q96C28 371 aaPredicted RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 RMDN1Q96DB5 314 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 MTRQ99707 1265 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 JPH2Q9BR39 696 aaPredicted RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 PAAF1Q9BRP4 392 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 LXNQ9BS40 222 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 HERC2P3Q9BVR0 1158 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 C22orf23Q9BZE7 217 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 CXCL16Q9H2A7 254 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 DHX33Q9H6R0 707 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 WDR6Q9NNW5 1121 aaKnown RBP7.33□□□□□ -1.24
CD44-221ENST00000526000 IGSF9Q9P2J2 1179 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 VAV3Q9UKW4 847 aa7.33□□□□□ -1.24
CD44-221ENST00000526000 CLUHO75153 1309 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 MED19A0JLT2 244 aaPredicted RBP7.32□□□□□ -1.24
CD44-221ENST00000526000 CASTOR2A6NHX0 329 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 POTEMA6NI47 508 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 CCL16O15467 120 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 ASAP2O43150 1006 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 TSPAN1O60635 241 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 NR1I2O75469 434 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 SLITRK3O94933 977 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 LMNAP02545 664 aaKnown RBP7.32□□□□□ -1.24
CD44-221ENST00000526000 LAMP2P13473 410 aa7.32□□□□□ -1.24
CD44-221ENST00000526000 ATP2B1P20020 1258 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms