RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 PLPP4Q5VZY2 271 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 FAM173BQ6P4H8 233 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 C1orf186Q6ZWK4 172 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 TMC7Q7Z402 723 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 HACE1Q8IYU2 909 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 KCTD17Q8N5Z5 321 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 TMEM169Q96HH4 297 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 TCF25Q9BQ70 676 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 NXF3Q9H4D5 531 aaKnown RBP23.08■■□□□ 1.29
VPS28-203ENST00000524521 DNAJB4Q9UDY4 337 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 USP20Q9Y2K6 914 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 CLIC4Q9Y696 253 aa23.08■■□□□ 1.29
VPS28-203ENST00000524521 CARNS1A5YM72 827 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 TTLL13PA6NNM8 815 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 CCDC169A6NNP5 214 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 FSCN2O14926 492 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 PER2O15055 1255 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 DDHD2O94830 711 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 EFNA5P52803 228 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 PEX3P56589 373 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 DLX2Q07687 328 aaPredicted RBP23.07■■□□□ 1.28
VPS28-203ENST00000524521 PTCRAQ6ISU1 281 aaPredicted RBP23.07■■□□□ 1.28
VPS28-203ENST00000524521 GAD1Q99259 594 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 CCDC113Q9H0I3 377 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 NGRNQ9NPE2 291 aaKnown RBP23.07■■□□□ 1.28
VPS28-203ENST00000524521 MTMR6Q9Y217 621 aa23.07■■□□□ 1.28
VPS28-203ENST00000524521 ARL5CA6NH57 179 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 K7ERI5 159 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 ACKR2O00590 384 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 N4BP3O15049 544 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 STX6O43752 255 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 ALDH2P05091 517 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 AKAP5P24588 427 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 LONP1P36776 959 aaKnown RBP23.06■■□□□ 1.28
VPS28-203ENST00000524521 MLH1P40692 756 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 SLC11A1P49279 550 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 NDUFV1P49821 464 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 GRIN1Q05586 938 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 RAD51AP2Q09MP3 1159 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 HSCBQ8IWL3 235 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 DAW1Q8N136 415 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 EFHBQ8N7U6 833 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 SYT2Q8N9I0 419 aaPredicted RBP23.06■■□□□ 1.28
VPS28-203ENST00000524521 CALML4Q96GE6 196 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 DRC1Q96MC2 740 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 PARP2Q9UGN5 583 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 GIT1Q9Y2X7 761 aa23.06■■□□□ 1.28
VPS28-203ENST00000524521 TTC28Q96AY4 2481 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 SFI1A8K8P3 1242 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 TNFRSF10AO00220 468 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 B4GALT3O60512 393 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 PLA2G4BP0C869 781 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 NPTX2P47972 431 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 CEBPZQ03701 1054 aaKnown RBP23.05■■□□□ 1.28
VPS28-203ENST00000524521 CLUL1Q15846 466 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 PUS10Q3MIT2 529 aaKnown RBP23.05■■□□□ 1.28
VPS28-203ENST00000524521 TMEM119Q4V9L6 283 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 TMEM173Q86WV6 379 aaPredicted RBP23.05■■□□□ 1.28
VPS28-203ENST00000524521 IGSF21Q96ID5 467 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 ZFP42Q96MM3 310 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 PDZD7Q9H5P4 517 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 MIOSQ9NXC5 875 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 FAN1Q9Y2M0 1017 aa23.05■■□□□ 1.28
VPS28-203ENST00000524521 GRXCR2A6NFK2 248 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 HIDE1A8MVS5 230 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 SLC26A4O43511 780 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 EDN1P05305 212 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 GUCY2CP25092 1073 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 MARCKSP29966 332 aaPredicted RBP23.04■■□□□ 1.28
VPS28-203ENST00000524521 CA8P35219 290 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 SCNN1GP51170 649 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 DMP1Q13316 513 aaPredicted RBP23.04■■□□□ 1.28
VPS28-203ENST00000524521 BMS1Q14692 1282 aaKnown RBP23.04■■□□□ 1.28
VPS28-203ENST00000524521 VPS52Q8N1B4 723 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 RASSF8Q8NHQ8 419 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 ADPGKQ9BRR6 497 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 TIPINQ9BVW5 301 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 KMT5AQ9NQR1 393 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 KLK14Q9P0G3 267 aa23.04■■□□□ 1.28
VPS28-203ENST00000524521 SPTBN5Q9NRC6 3674 aaKnown RBP23.04■■□□□ 1.28
VPS28-203ENST00000524521 INPPL1O15357 1258 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 TBX10O75333 385 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 CXCL14O95715 111 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 HSP90AA1P07900 732 aaKnown RBP23.03■■□□□ 1.28
VPS28-203ENST00000524521 IL9P15248 144 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 SLC12A3P55017 1021 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 MAPK7Q13164 816 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 SMC1AQ14683 1233 aaKnown RBP23.03■■□□□ 1.28
VPS28-203ENST00000524521 PTPAQ15257 358 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 DUSP6Q16828 381 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 DDX53Q86TM3 631 aaKnown RBP23.03■■□□□ 1.28
VPS28-203ENST00000524521 BCL7CQ8WUZ0 217 aaPredicted RBP23.03■■□□□ 1.28
VPS28-203ENST00000524521 CDCA3Q99618 268 aaPredicted RBP23.03■■□□□ 1.28
VPS28-203ENST00000524521 TMEM175Q9BSA9 504 aa23.03■■□□□ 1.28
VPS28-203ENST00000524521 ZSCAN16Q9H4T2 348 aaPredicted RBP23.03■■□□□ 1.28
VPS28-203ENST00000524521 NRP1O14786 923 aa23.02■■□□□ 1.28
VPS28-203ENST00000524521 OR1G1P47890 313 aa23.02■■□□□ 1.28
VPS28-203ENST00000524521 DHX8Q14562 1220 aaKnown RBP23.02■■□□□ 1.28
VPS28-203ENST00000524521 KARSQ15046 597 aaKnown RBP23.02■■□□□ 1.28
VPS28-203ENST00000524521 NT5DC1Q5TFE4 455 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms