RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 SH3GL3Q99963 347 aa19.05■□□□□ 0.64
NUP54-205ENST00000507257 THRAP3Q9Y2W1 955 aaKnown RBP19.05■□□□□ 0.64
NUP54-205ENST00000507257 SPATA31A5Q5VU36 1347 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 SPATA31A6Q5VVP1 1343 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 SPATA31A7Q8IWB4 1347 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 RSPH10B2B2RC85 870 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 TP73O15350 636 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 TTC4O95801 387 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 RSPH10BP0C881 870 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 GZMAP12544 262 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 AKR1B1P15121 316 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 GNAZP19086 355 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 STRN3Q13033 797 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 LONRF1Q17RB8 773 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 TPTE2Q6XPS3 522 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 PALB2Q86YC2 1186 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 SLC9A9Q8IVB4 645 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 LENG9Q96B70 501 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 NAF1Q96HR8 494 aaKnown RBP19.04■□□□□ 0.64
NUP54-205ENST00000507257 RUSC1Q9BVN2 902 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 NARFQ9UHQ1 456 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 PNMA3Q9UL41 463 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 RTCBQ9Y3I0 505 aaKnown RBP19.04■□□□□ 0.64
NUP54-205ENST00000507257 COL16A1Q07092 1604 aaPredicted RBP19.04■□□□□ 0.64
NUP54-205ENST00000507257 USP17L10C9JJH3 530 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 ANKRD63C9JTQ0 380 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 MAGEB2O15479 319 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 HIP1RO75146 1068 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 IL1R1P14778 569 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 COMTP21964 271 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 MARCKSL1P49006 195 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 ARHGAP4P98171 946 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 MYL7Q01449 175 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 LRRC14Q15048 493 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 DDB1Q16531 1140 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 CBWD6Q4V339 395 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 CBWD3Q5JTY5 395 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 CBWD5Q5RIA9 395 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 CGB2Q6NT52 195 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 STXBP4Q6ZWJ1 553 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 KIF2BQ8N4N8 673 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 LMO3Q8TAP4 145 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 UHMK1Q8TAS1 419 aaKnown RBP19.04■□□□□ 0.64
NUP54-205ENST00000507257 MICAL1Q8TDZ2 1067 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 TGS1Q96RS0 853 aaKnown RBP19.04■□□□□ 0.64
NUP54-205ENST00000507257 RNPEPL1Q9HAU8 725 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 ANKIB1Q9P2G1 1089 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 RABGAP1Q9Y3P9 1069 aa19.04■□□□□ 0.64
NUP54-205ENST00000507257 A8MUI8 341 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 P4HA2O15460 535 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 FTLP02792 175 aaPredicted RBP19.03■□□□□ 0.64
NUP54-205ENST00000507257 PYGMP11217 842 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 CIITAP33076 1130 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 YARSP54577 528 aaKnown RBP19.03■□□□□ 0.64
NUP54-205ENST00000507257 KCNA1Q09470 495 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 TTBK2Q6IQ55 1244 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 HS2ST1Q7LGA3 356 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 RELL1Q8IUW5 271 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 RIBC1Q8N443 379 aaPredicted RBP19.03■□□□□ 0.64
NUP54-205ENST00000507257 ANKLE1Q8NAG6 615 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 TMEM174Q8WUU8 243 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 RMDN2Q96LZ7 410 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 BHMT2Q9H2M3 363 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 ZFATQ9P243 1243 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 FRMD4BQ9Y2L6 1034 aa19.03■□□□□ 0.64
NUP54-205ENST00000507257 USP17L15C9J2P7 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L13C9JLJ4 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L11C9JVI0 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L18D6R9N7 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L22D6RA61 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L17D6RBQ6 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L19D6RCP7 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L20D6RJB6 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 FOXN3O00409 490 aaPredicted RBP19.02■□□□□ 0.64
NUP54-205ENST00000507257 MEIS1O00470 390 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 SKAP2O75563 359 aaPredicted RBP19.02■□□□□ 0.64
NUP54-205ENST00000507257 BRAFP15056 766 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 STX2P32856 288 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 MGAT5Q09328 741 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L24Q0WX57 530 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 SF3A3Q12874 501 aaKnown RBP eCLIP19.02■□□□□ 0.64
NUP54-205ENST00000507257 GRAPQ13588 217 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 RINT1Q6NUQ1 792 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP17L6PQ6QN14 398 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 RGS9BPQ6ZS82 235 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 ENDOVQ8N8Q3 282 aaKnown RBP19.02■□□□□ 0.64
NUP54-205ENST00000507257 LINC00116Q8NCU8 138 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 GRAPLQ8TC17 118 aaPredicted RBP19.02■□□□□ 0.64
NUP54-205ENST00000507257 DDX23Q9BUQ8 820 aaKnown RBP19.02■□□□□ 0.64
NUP54-205ENST00000507257 DNAJC18Q9H819 358 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 GGT7Q9UJ14 662 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 VAV3Q9UKW4 847 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 STK38LQ9Y2H1 464 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 USP20Q9Y2K6 914 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 STARD13Q9Y3M8 1113 aa19.02■□□□□ 0.64
NUP54-205ENST00000507257 FSCN2O14926 492 aa19.02■□□□□ 0.63
NUP54-205ENST00000507257 FESP07332 822 aa19.02■□□□□ 0.63
NUP54-205ENST00000507257 CALB2P22676 271 aa19.02■□□□□ 0.63
NUP54-205ENST00000507257 ABL2P42684 1182 aa19.02■□□□□ 0.63
NUP54-205ENST00000507257 SLC18A1P54219 525 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms