RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 RFXAPO00287 272 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 LPXNO60711 386 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 NPTXRO95502 500 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 ZNF131P52739 623 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 TIGD5Q53EQ6 642 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 NOMO2Q5JPE7 1267 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 ATF7IP2Q5U623 682 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 LPPQ93052 612 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 MRPL38Q96DV4 380 aaKnown RBP18.36■□□□□ 0.53
SNCA-209ENST00000506244 SPATA32Q96LK8 384 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 EIF2AQ9BY44 585 aaKnown RBP18.36■□□□□ 0.53
SNCA-209ENST00000506244 LRRC27Q9C0I9 530 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 PDZD7Q9H5P4 517 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 TYW1Q9NV66 732 aaKnown RBP18.36■□□□□ 0.53
SNCA-209ENST00000506244 KANSL3Q9P2N6 904 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 RCOR1Q9UKL0 485 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 INPP5FQ9Y2H2 1132 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 ZDHHC9Q9Y397 364 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 MTCH2Q9Y6C9 303 aa18.36■□□□□ 0.53
SNCA-209ENST00000506244 NPHP3-ACAD11A0A0J9YXS1 232 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 SFI1A8K8P3 1242 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 SLC16A4O15374 487 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 ANP32AP39687 249 aaKnown RBP18.35■□□□□ 0.53
SNCA-209ENST00000506244 CACNB1Q02641 598 aaPredicted RBP18.35■□□□□ 0.53
SNCA-209ENST00000506244 RNASELQ05823 741 aaKnown RBP18.35■□□□□ 0.53
SNCA-209ENST00000506244 THNSL1Q8IYQ7 743 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 MICALL1Q8N3F8 863 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 MYCT1Q8N699 235 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 PDILTQ8N807 584 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 COLGALT1Q8NBJ5 622 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 SMG8Q8ND04 991 aaKnown RBP18.35■□□□□ 0.53
SNCA-209ENST00000506244 ZNF558Q96NG5 402 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 SCAND2PQ9GZW5 306 aaPredicted RBP18.35■□□□□ 0.53
SNCA-209ENST00000506244 NXF3Q9H4D5 531 aaKnown RBP18.35■□□□□ 0.53
SNCA-209ENST00000506244 ZHX3Q9H4I2 956 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 MAGEF1Q9HAY2 307 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 GIT1Q9Y2X7 761 aa18.35■□□□□ 0.53
SNCA-209ENST00000506244 K7ENM7 598 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 OFD1O75665 1012 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 NCKAP1LP55160 1127 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 UBE3AQ05086 875 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 GIT2Q14161 759 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 LONRF3Q496Y0 759 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 AXDND1Q5T1B0 1012 aaPredicted RBP18.34■□□□□ 0.53
SNCA-209ENST00000506244 SHC4Q6S5L8 630 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 AGMOQ6ZNB7 445 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 IQUBQ8NA54 791 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 TMEM161BQ8NDZ6 487 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 KCNN1Q92952 543 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 TNMDQ9H2S6 317 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 CWH43Q9H720 699 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 TBC1D13Q9NVG8 400 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 SEL1LQ9UBV2 794 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 PCDHA7Q9UN72 937 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 TNFSF13BQ9Y275 285 aa18.34■□□□□ 0.53
SNCA-209ENST00000506244 INPPL1O15357 1258 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 MAPTP10636 758 aaKnown RBP18.33■□□□□ 0.52
SNCA-209ENST00000506244 GAP43P17677 238 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 ALDH7A1P49419 539 aaKnown RBP18.33■□□□□ 0.52
SNCA-209ENST00000506244 AMPD3Q01432 767 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 ZNF568Q3ZCX4 644 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 RESP18Q5W5W9 173 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 KCNT2Q6UVM3 1135 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 CDR2LQ86X02 465 aaPredicted RBP18.33■□□□□ 0.52
SNCA-209ENST00000506244 FAM178BQ8IXR5 827 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 KLHL23Q8NBE8 558 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 LEO1Q8WVC0 666 aaPredicted RBP18.33■□□□□ 0.52
SNCA-209ENST00000506244 DDX12PQ92771 950 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 FAM193BQ96PV7 902 aaPredicted RBP18.33■□□□□ 0.52
SNCA-209ENST00000506244 RPS6KC1Q96S38 1066 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 APOL6Q9BWW8 343 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 PLAGL2Q9UPG8 496 aa18.33■□□□□ 0.52
SNCA-209ENST00000506244 TRANK1O15050 2925 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 A0A087X0B3 334 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 MEIS3P2A8K0S8 358 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 TRAK2O60296 914 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 ZC3H11AO75152 810 aaKnown RBP eCLIP18.32■□□□□ 0.52
SNCA-209ENST00000506244 MLH1P40692 756 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 NT5DC1Q5TFE4 455 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 ZPBP2Q6X784 338 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 LRRC55Q6ZSA7 311 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 HAUS6Q7Z4H7 955 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 PPP2R3CQ969Q6 453 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 DHX58Q96C10 678 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 ACO2Q99798 780 aaKnown RBP18.32■□□□□ 0.52
SNCA-209ENST00000506244 PANK2Q9BZ23 570 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 HCSTQ9UBK5 93 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 LZTS1Q9Y250 596 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 HES2Q9Y543 173 aa18.32■□□□□ 0.52
SNCA-209ENST00000506244 PRRC2BQ5JSZ5 2229 aaKnown RBP18.31■□□□□ 0.52
SNCA-209ENST00000506244 ARL5CA6NH57 179 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 MYMKA6NI61 221 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 TTLL13PA6NNM8 815 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 FGF18O76093 207 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 EDN1P05305 212 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 ITGB1P05556 798 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 KRT17Q04695 432 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 E2F4Q16254 413 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 MPZL3Q6UWV2 235 aa18.31■□□□□ 0.52
SNCA-209ENST00000506244 DYMQ7RTS9 669 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms