RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 KCNC3Q14003 757 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 GIT2Q14161 759 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 ECM1Q16610 540 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 MAPK6Q16659 721 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 ARL6IP4Q66PJ3 421 aaKnown RBP17.39■□□□□ 0.37
HDAC4-213ENST00000496347 TMEM184AQ6ZMB5 413 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 MAEAQ7L5Y9 396 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 DDX53Q86TM3 631 aaKnown RBP17.39■□□□□ 0.37
HDAC4-213ENST00000496347 VN1R2Q8NFZ6 395 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 BSNDQ8WZ55 320 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 FAM193BQ96PV7 902 aaPredicted RBP17.39■□□□□ 0.37
HDAC4-213ENST00000496347 GBP3Q9H0R5 595 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 NXF3Q9H4D5 531 aaKnown RBP17.39■□□□□ 0.37
HDAC4-213ENST00000496347 KIAA1024Q9UPX6 916 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 GIT1Q9Y2X7 761 aa17.39■□□□□ 0.37
HDAC4-213ENST00000496347 C2orf71A6NGG8 1288 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 ARL5CA6NH57 179 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 HIDE1A8MVS5 230 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 PER2O15055 1255 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 B4GALT3O60512 393 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 MLH1P40692 756 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 SLC11A1P49279 550 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 EFNA5P52803 228 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 BRAPQ7Z569 592 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 VPS52Q8N1B4 723 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 KCTD17Q8N5Z5 321 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 MRPL43Q8N983 215 aaKnown RBP17.38■□□□□ 0.37
HDAC4-213ENST00000496347 DEPTORQ8TB45 409 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 IFT74Q96LB3 600 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 CCDC113Q9H0I3 377 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 FZD8Q9H461 694 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 DNAJB4Q9UDY4 337 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 IRAK3Q9Y616 596 aa17.38■□□□□ 0.37
HDAC4-213ENST00000496347 C19orf67A6NJJ6 358 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 NT5C1B-RDH14C9J2C7 533 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 N4BP3O15049 544 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 BMP15O95972 392 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 CTSAP10619 480 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 DSC1Q08554 894 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 CUL4AQ13619 759 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 IL17AQ16552 155 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 ZNF280BQ86YH2 543 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 BCL7CQ8WUZ0 217 aaPredicted RBP17.37■□□□□ 0.37
HDAC4-213ENST00000496347 CASP10Q92851 521 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 GAD1Q99259 594 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 CD320Q9NPF0 282 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 DNM3Q9UQ16 869 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 HES2Q9Y543 173 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 PHLPP2Q6ZVD8 1323 aa17.37■□□□□ 0.37
HDAC4-213ENST00000496347 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.36■□□□□ 0.37
HDAC4-213ENST00000496347 PP2D1A8MPX8 630 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 NPTXRO95502 500 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 POMCP01189 267 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 PRKCBP05771 671 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 HOXB8P17481 243 aaPredicted RBP17.36■□□□□ 0.37
HDAC4-213ENST00000496347 PDCP20941 246 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 AFF1P51825 1210 aaKnown RBP17.36■□□□□ 0.37
HDAC4-213ENST00000496347 GRIK3Q13003 919 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 PRPF4BQ13523 1007 aaKnown RBP17.36■□□□□ 0.37
HDAC4-213ENST00000496347 HYIQ5T013 277 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 LARP1BQ659C4 914 aaKnown RBP17.36■□□□□ 0.37
HDAC4-213ENST00000496347 DRC1Q96MC2 740 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 ZFP42Q96MM3 310 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 MMTAG2Q9BU76 263 aaKnown RBP17.36■□□□□ 0.37
HDAC4-213ENST00000496347 TIPINQ9BVW5 301 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 NT5C3AQ9H0P0 336 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 PDZD7Q9H5P4 517 aa17.36■□□□□ 0.37
HDAC4-213ENST00000496347 USP15Q9Y4E8 981 aaPredicted RBP17.36■□□□□ 0.37
HDAC4-213ENST00000496347 ACKR2O00590 384 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 SLC26A4O43511 780 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 DDHD2O94830 711 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 SCNN1GP51170 649 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 DMP1Q13316 513 aaPredicted RBP17.35■□□□□ 0.37
HDAC4-213ENST00000496347 TMEM132AQ24JP5 1023 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 ANKRD54Q6NXT1 300 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 COLGALT2Q8IYK4 626 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 SUSD6Q92537 303 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 AK8Q96MA6 479 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 ADPGKQ9BRR6 497 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 APOL6Q9BWW8 343 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 VN1R3Q9BXE9 311 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 BACH2Q9BYV9 841 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 RNF39Q9H2S5 420 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 C17orf75Q9HAS0 396 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 HCFC2Q9Y5Z7 792 aa17.35■□□□□ 0.37
HDAC4-213ENST00000496347 VWA3AA6NCI4 1184 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 PI4K2BG5E9Z4 385 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 NR1I2O75469 434 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 ALDH2P05091 517 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 ALADP13716 330 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 CA8P35219 290 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 RBM10P98175 930 aaKnown RBP17.34■□□□□ 0.37
HDAC4-213ENST00000496347 PTPN14Q15678 1187 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 DCAF4L1Q3SXM0 396 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 TPRNQ4KMQ1 711 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 APBB1IPQ7Z5R6 666 aaPredicted RBP17.34■□□□□ 0.37
HDAC4-213ENST00000496347 TMEM87AQ8NBN3 555 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 RPS6KC1Q96S38 1066 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 KIFC3Q9BVG8 833 aa17.34■□□□□ 0.37
HDAC4-213ENST00000496347 RUSC1Q9BVN2 902 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms