RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 REM2Q8IYK8 340 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-230ENST00000488543 ZSWIM2Q8NEG5 633 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 NHEJ1Q9H9Q4 299 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-230ENST00000488543 SIX2Q9NPC8 291 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 PLCB1Q9NQ66 1216 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 NRBP2Q9NSY0 501 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 ZNHIT6Q9NWK9 470 aaKnown RBP13.23□□□□□ -0.29
HDAC6-230ENST00000488543 ARHGAP20Q9P2F6 1191 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 ZNF236Q9UL36 1845 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 DENND3A2RUS2 1198 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 CTAGE9A4FU28 777 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 EXOC3O60645 756 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 SRGAP2O75044 1071 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 PLEKP08567 350 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-230ENST00000488543 ACTN1P12814 892 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 PON1P27169 355 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 SMTNP53814 917 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 POLGP54098 1239 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-230ENST00000488543 SNRPFP62306 86 aaKnown RBP13.23□□□□□ -0.29
HDAC6-230ENST00000488543 TCERG1LQ5VWI1 586 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 SLC39A4Q6P5W5 647 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 TAS1R3Q7RTX0 852 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 PLPPR4Q7Z2D5 763 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 C16orf70Q9BSU1 422 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 SMARCAD1Q9H4L7 1026 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 PCIF1Q9H4Z3 704 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 NLRC4Q9NPP4 1024 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 FRMD4BQ9Y2L6 1034 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 MGAMO43451 1857 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 GTPBP10A4D1E9 387 aaKnown RBP13.22□□□□□ -0.29
HDAC6-230ENST00000488543 GPR25O00155 361 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 ARL2P36404 184 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 POLR2FP61218 127 aaKnown RBP13.22□□□□□ -0.29
HDAC6-230ENST00000488543 VSNL1P62760 191 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 PPP2R5AQ15172 486 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 CCDC170Q8IYT3 715 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 ASAP3Q8TDY4 903 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 EMID1Q96A84 441 aaPredicted RBP13.22□□□□□ -0.29
HDAC6-230ENST00000488543 UBXN6Q9BZV1 441 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 PDE11AQ9HCR9 933 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 ABCB6Q9NP58 842 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 HSPBP1Q9NZL4 362 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 ARHGAP28Q9P2N2 729 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 TRPC6Q9Y210 931 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 EIF3CLB5ME19 914 aaKnown RBP13.22□□□□□ -0.29
HDAC6-230ENST00000488543 PPFIA4O75335 1185 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 MMP3P08254 477 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 TRIM49P0CI25 452 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 TRIM49CP0CI26 452 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 ADSSP30520 456 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 HNRNPH2P55795 449 aaKnown RBP13.22□□□□□ -0.29
HDAC6-230ENST00000488543 IGBP1P78318 339 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 BEX3Q00994 111 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 EXOC3L4Q17RC7 722 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 KLHDC7AQ5VTJ3 777 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 HGSNATQ68CP4 663 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 CACNA2D4Q7Z3S7 1137 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 ATP8B4Q8TF62 1192 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 KCNN1Q92952 543 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 CAPZA3Q96KX2 299 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 EIF3CQ99613 913 aaKnown RBP13.22□□□□□ -0.29
HDAC6-230ENST00000488543 EMSYQ7Z589 1322 aa13.22□□□□□ -0.29
HDAC6-230ENST00000488543 ZNF263O14978 683 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 GLRA2P23416 452 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 CNGA1P29973 690 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 FMO5P49326 533 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 MCCD1P59942 119 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-230ENST00000488543 BFSP1Q12934 665 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 KIF22Q14807 665 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 CBWD6Q4V339 395 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 CBWD3Q5JTY5 395 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 CBWD5Q5RIA9 395 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 C1orf220Q5T0J3 134 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 GBP6Q6ZN66 633 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 TLK2Q86UE8 772 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 LRRC71Q8N4P6 559 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 XXYLT1Q8NBI6 393 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 PLEKHO2Q8TD55 490 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 SYN2Q92777 582 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-230ENST00000488543 NAPGQ99747 312 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-230ENST00000488543 ERAP1Q9NZ08 941 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 BCCIPQ9P287 314 aaKnown RBP eCLIP13.21□□□□□ -0.29
HDAC6-230ENST00000488543 AJAP1Q9UKB5 411 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-230ENST00000488543 EXOC7Q9UPT5 735 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 USP20Q9Y2K6 914 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 H3BRB1 525 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 MAPK13O15264 365 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 ADRB2P07550 413 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 GJB1P08034 283 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 CYLC1P35663 651 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-230ENST00000488543 RFC5P40937 340 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 RDH13Q8NBN7 331 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 SLC7A3Q8WY07 619 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 ZNF668Q96K58 619 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-230ENST00000488543 IFT74Q96LB3 600 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 GDAP1L1Q96MZ0 367 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 CFHR5Q9BXR6 569 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 TUT1Q9H6E5 874 aaKnown RBP13.21□□□□□ -0.29
HDAC6-230ENST00000488543 GCNT4Q9P109 453 aa13.21□□□□□ -0.29
HDAC6-230ENST00000488543 RCCD1A6NED2 376 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms