RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 PPARAQ07869 468 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 TIGD2Q4W5G0 525 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 KCNV1Q6PIU1 500 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 PLXDC1Q8IUK5 500 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 NXPE1Q8N323 547 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 OR52N2Q8NGI0 321 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 LARP4BQ92615 738 aaKnown RBP4.94□□□□□ -1.62
VPS50-217ENST00000485140 ZNF496Q96IT1 587 aaPredicted RBP4.94□□□□□ -1.62
VPS50-217ENST00000485140 GPR101Q96P66 508 aaPredicted RBP4.94□□□□□ -1.62
VPS50-217ENST00000485140 TARS2Q9BW92 718 aaKnown RBP4.94□□□□□ -1.62
VPS50-217ENST00000485140 KCNH6Q9H252 994 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 EIF2B4Q9UI10 523 aaKnown RBP4.94□□□□□ -1.62
VPS50-217ENST00000485140 USP18Q9UMW8 372 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS50-217ENST00000485140 ELL2O00472 640 aaPredicted RBP4.93□□□□□ -1.62
VPS50-217ENST00000485140 RNASET2O00584 256 aaKnown RBP4.93□□□□□ -1.62
VPS50-217ENST00000485140 TGM5O43548 720 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 B3GALT2O43825 422 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 RBP3P10745 1247 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 CRHR1P34998 444 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 SOX5P35711 763 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 MANFP55145 182 aaKnown RBP4.93□□□□□ -1.62
VPS50-217ENST00000485140 CD69Q07108 199 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 ATP13A4Q4VNC1 1196 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 DALRD3Q5D0E6 543 aaKnown RBP4.93□□□□□ -1.62
VPS50-217ENST00000485140 LAIR1Q6GTX8 287 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 UNQ6494/PRO21346Q6UXR6 183 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 RHOUQ7L0Q8 258 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 DHX37Q8IY37 1157 aaKnown RBP4.93□□□□□ -1.62
VPS50-217ENST00000485140 ZG16BQ96DA0 208 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 MYEOVQ96EZ4 313 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 TTC1Q99614 292 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 NDC1Q9BTX1 674 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 IKZF4Q9H2S9 585 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 PIF1Q9H611 641 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 IFT22Q9H7X7 185 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 KANSL2Q9H9L4 492 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 H2AFY2Q9P0M6 372 aaPredicted RBP4.93□□□□□ -1.62
VPS50-217ENST00000485140 PRSS50Q9UI38 385 aa4.93□□□□□ -1.62
VPS50-217ENST00000485140 BRINP1O60477 761 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 SLC25A3Q00325 362 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 MGAT5Q09328 741 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 DDX46Q7L014 1031 aaKnown RBP4.92□□□□□ -1.62
VPS50-217ENST00000485140 MRGPREQ86SM8 312 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 PIK3C3Q8NEB9 887 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 ZFP28Q8NHY6 868 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 CPT1CQ8TCG5 803 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 PROKR1Q8TCW9 393 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 ZNF480Q8WV37 535 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 SLC9A6Q92581 669 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 EMC7Q9NPA0 242 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 SLC2A4RGQ9NR83 387 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS50-217ENST00000485140 ING3Q9NXR8 418 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 GPRC5BQ9NZH0 403 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 PACSIN3Q9UKS6 424 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 SORCS3Q9UPU3 1222 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 DMRT1Q9Y5R6 373 aa4.92□□□□□ -1.62
VPS50-217ENST00000485140 PRSS38A1L453 326 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 GSG1L2A8MUP6 293 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 PJA2O43164 708 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 PDE8AO60658 829 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 SCAF4O95104 1147 aaKnown RBP4.91□□□□□ -1.62
VPS50-217ENST00000485140 GCP02774 474 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 BMPR1AP36894 532 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 ADCYAP1R1P41586 468 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 USP14P54578 494 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 APBA1Q02410 837 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 ERCC6LQ2NKX8 1250 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 TKFCQ3LXA3 575 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 ZBTB41Q5SVQ8 909 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 BROXQ5VW32 411 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 C1QL3Q5VWW1 255 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 IGFL4Q6B9Z1 124 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 EFCAB12Q6NXP0 572 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 SNX33Q8WV41 574 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 REXO4Q9GZR2 422 aaKnown RBP4.91□□□□□ -1.62
VPS50-217ENST00000485140 TOR3AQ9H497 397 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 CYP4F11Q9HBI6 524 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 SPTLC3Q9NUV7 552 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 CDY2AQ9Y6F7 541 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 RPTORQ8N122 1335 aa4.91□□□□□ -1.62
VPS50-217ENST00000485140 FAM83GA6ND36 823 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 GRXCR1A8MXD5 290 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 PRAMEF4O60810 478 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 BPIP17213 487 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 CASRP41180 1078 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 MRPS9P82933 396 aaKnown RBP4.9□□□□□ -1.63
VPS50-217ENST00000485140 ACAP1Q15027 740 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 PCBP1Q15365 356 aaKnown RBP eCLIP4.9□□□□□ -1.63
VPS50-217ENST00000485140 FSCN1Q16658 493 aaKnown RBP4.9□□□□□ -1.63
VPS50-217ENST00000485140 ANO4Q32M45 955 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 GPRIN1Q7Z2K8 1008 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 GDF7Q7Z4P5 450 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 DNAJC10Q8IXB1 793 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 LEO1Q8WVC0 666 aaPredicted RBP4.9□□□□□ -1.63
VPS50-217ENST00000485140 CRAMP1Q96RY5 1269 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 TTPALQ9BTX7 342 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 CAAP1Q9H8G2 361 aa4.9□□□□□ -1.63
VPS50-217ENST00000485140 ZBTB21Q9ULJ3 1066 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms