RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 COPB1P53618 953 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 CRYBB1P53674 252 aaPredicted RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 CDC42EP1Q00587 391 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 TMEM62Q0P6H9 643 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 PTK7Q13308 1070 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 NR1I3Q14994 352 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 PTGISQ16647 500 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 MAPK6Q16659 721 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 FAM47CQ5HY64 1035 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 FAM26DQ5JW98 314 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 EEF1DP3Q658K8 133 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 ARMCX5Q6P1M9 558 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 TRAF7Q6Q0C0 670 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 TSHZ1Q6ZSZ6 1077 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 FRMD5Q7Z6J6 570 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 FAM114A1Q8IWE2 563 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 TRIM59Q8IWR1 403 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 ZNF710Q8N1W2 664 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 PLEKHO2Q8TD55 490 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 NLRP7Q8WX94 980 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 ZBTB45Q96K62 511 aaPredicted RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 PRIMPOLQ96LW4 560 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 PPP1R9BQ96SB3 815 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 OSMRQ99650 979 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 ACO2Q99798 780 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 TUBGCP2Q9BSJ2 902 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 MRPL4Q9BYD3 311 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 SEZ6LQ9BYH1 1024 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 INO80BQ9C086 356 aaPredicted RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 PCIF1Q9H4Z3 704 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 RTN4Q9NQC3 1192 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 PRDM10Q9NQV6 1147 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 STARD7Q9NQZ5 370 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 TRMT13Q9NUP7 481 aaKnown RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 PRMT7Q9NVM4 692 aaPredicted RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 TAB2Q9NYJ8 693 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 HSPBP1Q9NZL4 362 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 TNFSF13BQ9Y275 285 aa9.02□□□□□ -0.97
USP4-210ENST00000483212 TRIP12Q14669 1992 aaPredicted RBP9.02□□□□□ -0.97
USP4-210ENST00000483212 LGALS16A8MUM7 142 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 MAPK13O15264 365 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 B4GALT4O60513 344 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 CSDE1O75534 798 aaKnown RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 TOM1L1O75674 476 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 GNA14O95837 355 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 SERPINC1P01008 464 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 CD4P01730 458 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 CHRNA1P02708 482 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 RPLP2P05387 115 aaKnown RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 ADRB2P07550 413 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 ARF4P18085 180 aaPredicted RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 CDK11BP21127 795 aaKnown RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 CDC25BP30305 580 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 HOXA11P31270 313 aaPredicted RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 LIG4P49917 911 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 CYP2J2P51589 502 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 UBASH3AP57075 661 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 MRPS6P82932 125 aaKnown RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 MCL1Q07820 350 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 RBL2Q08999 1139 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 PRPF4BQ13523 1007 aaKnown RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 SNX17Q15036 470 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 MAN2A1Q16706 1144 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 C1orf220Q5T0J3 134 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 CEP135Q66GS9 1140 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 CRELD2Q6UXH1 353 aaPredicted RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 FAM126BQ8IXS8 530 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 FAM186BQ8IYM0 893 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 XXYLT1Q8NBI6 393 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 CELF4Q9BZC1 486 aaKnown RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 GCOM2Q9BZD3 368 aaPredicted RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 TRIM5Q9C035 493 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 SENP6Q9GZR1 1112 aaPredicted RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 TRPV6Q9H1D0 765 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 PDZD7Q9H5P4 517 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 MAGEC2Q9UBF1 373 aaPredicted RBP9.01□□□□□ -0.97
USP4-210ENST00000483212 TRPV2Q9Y5S1 764 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 CDY2AQ9Y6F7 541 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 DNAH12Q6ZR08 3092 aa9.01□□□□□ -0.97
USP4-210ENST00000483212 KAT6AQ92794 2004 aa9□□□□□ -0.97
USP4-210ENST00000483212 A0A1B0GUA9 196 aa9□□□□□ -0.97
USP4-210ENST00000483212 GOLGA8IPA6NC78 632 aa9□□□□□ -0.97
USP4-210ENST00000483212 GOLGA8JA6NMD2 632 aa9□□□□□ -0.97
USP4-210ENST00000483212 KIAA0391O15091 583 aaKnown RBP9□□□□□ -0.97
USP4-210ENST00000483212 TEX33O43247 280 aa9□□□□□ -0.97
USP4-210ENST00000483212 GALR2O43603 387 aaPredicted RBP9□□□□□ -0.97
USP4-210ENST00000483212 EXTL3O43909 919 aa9□□□□□ -0.97
USP4-210ENST00000483212 EXOC3O60645 756 aa9□□□□□ -0.97
USP4-210ENST00000483212 CAND2O75155 1236 aa9□□□□□ -0.97
USP4-210ENST00000483212 FGFR4P22455 802 aa9□□□□□ -0.97
USP4-210ENST00000483212 EIF4BP23588 611 aaKnown RBP9□□□□□ -0.97
USP4-210ENST00000483212 PSMC2P35998 433 aaKnown RBP9□□□□□ -0.97
USP4-210ENST00000483212 WNT7BP56706 349 aa9□□□□□ -0.97
USP4-210ENST00000483212 PLCB2Q00722 1185 aa9□□□□□ -0.97
USP4-210ENST00000483212 PCBP1Q15365 356 aaKnown RBP eCLIP9□□□□□ -0.97
USP4-210ENST00000483212 CCDC40Q4G0X9 1142 aa9□□□□□ -0.97
USP4-210ENST00000483212 ZBTB41Q5SVQ8 909 aa9□□□□□ -0.97
USP4-210ENST00000483212 ATF7IP2Q5U623 682 aa9□□□□□ -0.97
USP4-210ENST00000483212 C1orf53Q5VUE5 145 aa9□□□□□ -0.97
USP4-210ENST00000483212 SLFN12LQ6IEE8 588 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms