RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ENTPD7Q9NQZ7 604 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 TSHZ2Q9NRE2 1034 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 CCDC39Q9UFE4 941 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 RCOR1Q9UKL0 485 aa19.62■□□□□ 0.73
COL7A1-205ENST00000465238 CIZ1Q9ULV3 898 aaPredicted RBP19.62■□□□□ 0.73
COL7A1-205ENST00000465238 USP15Q9Y4E8 981 aaPredicted RBP19.62■□□□□ 0.73
COL7A1-205ENST00000465238 CUTAO60888 179 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 SKIP12755 728 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 ATF7P17544 494 aaPredicted RBP19.61■□□□□ 0.73
COL7A1-205ENST00000465238 PLPP4Q5VZY2 271 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 PADI6Q6TGC4 694 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 TMEM184AQ6ZMB5 413 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 RHPN2Q8IUC4 686 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 VN1R2Q8NFZ6 395 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 HELQQ8TDG4 1101 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 PSPC1Q8WXF1 523 aaKnown RBP19.61■□□□□ 0.73
COL7A1-205ENST00000465238 SPATA32Q96LK8 384 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 MUTYHQ9UIF7 546 aa19.61■□□□□ 0.73
COL7A1-205ENST00000465238 LOC730098B7Z3J9 87 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 ASAP2O43150 1006 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 PBX3P40426 434 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 PHKA2P46019 1235 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 ME1P48163 572 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 KCNC3Q14003 757 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 KARSQ15046 597 aaKnown RBP19.6■□□□□ 0.73
COL7A1-205ENST00000465238 TMEM119Q4V9L6 283 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 USP49Q70CQ1 688 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 TMC7Q7Z402 723 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 SLC39A11Q8N1S5 342 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 MCPH1Q8NEM0 835 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 PHF7Q9BWX1 381 aaPredicted RBP19.6■□□□□ 0.73
COL7A1-205ENST00000465238 XPNPEP1Q9NQW7 623 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 PIEZO1Q92508 2521 aa19.6■□□□□ 0.73
COL7A1-205ENST00000465238 CARNS1A5YM72 827 aa19.59■□□□□ 0.73
COL7A1-205ENST00000465238 SSBP05455 408 aaKnown RBP eCLIP19.59■□□□□ 0.73
COL7A1-205ENST00000465238 CYP11B2P19099 503 aa19.59■□□□□ 0.73
COL7A1-205ENST00000465238 ALDH7A1P49419 539 aaKnown RBP19.59■□□□□ 0.73
COL7A1-205ENST00000465238 RBM10P98175 930 aaKnown RBP19.59■□□□□ 0.73
COL7A1-205ENST00000465238 CBX2Q14781 532 aaPredicted RBP19.59■□□□□ 0.73
COL7A1-205ENST00000465238 TWF2Q6IBS0 349 aaKnown RBP19.59■□□□□ 0.73
COL7A1-205ENST00000465238 MAEAQ7L5Y9 396 aa19.59■□□□□ 0.73
COL7A1-205ENST00000465238 KCNK18Q7Z418 384 aa19.59■□□□□ 0.73
COL7A1-205ENST00000465238 PRPF31Q8WWY3 499 aaKnown RBP19.59■□□□□ 0.73
COL7A1-205ENST00000465238 SUSD6Q92537 303 aa19.59■□□□□ 0.73
COL7A1-205ENST00000465238 CHAMP1Q96JM3 812 aa19.59■□□□□ 0.73
COL7A1-205ENST00000465238 NLRP4Q96MN2 994 aa19.59■□□□□ 0.73
COL7A1-205ENST00000465238 SCAND2PQ9GZW5 306 aaPredicted RBP19.59■□□□□ 0.73
COL7A1-205ENST00000465238 PIN4Q9Y237 131 aaKnown RBP19.59■□□□□ 0.73
COL7A1-205ENST00000465238 COL4A3BPQ9Y5P4 624 aa19.59■□□□□ 0.73
COL7A1-205ENST00000465238 HIDE1A8MVS5 230 aa19.58■□□□□ 0.72
COL7A1-205ENST00000465238 PLCG1P19174 1290 aa19.58■□□□□ 0.72
COL7A1-205ENST00000465238 RAB27AP51159 221 aa19.58■□□□□ 0.72
COL7A1-205ENST00000465238 LAMTOR4Q0VGL1 99 aa19.58■□□□□ 0.72
COL7A1-205ENST00000465238 MXD4Q14582 209 aaPredicted RBP19.58■□□□□ 0.72
COL7A1-205ENST00000465238 RRAGBQ5VZM2 374 aa19.58■□□□□ 0.72
COL7A1-205ENST00000465238 CATSPER4Q7RTX7 472 aa19.58■□□□□ 0.72
COL7A1-205ENST00000465238 LEO1Q8WVC0 666 aaPredicted RBP19.58■□□□□ 0.72
COL7A1-205ENST00000465238 PCDHA7Q9UN72 937 aa19.58■□□□□ 0.72
COL7A1-205ENST00000465238 TECTAO75443 2155 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 ZNF623O75123 536 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 PLA2G4BP0C869 781 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 SRGAP2CP0DJJ0 459 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 HOXB8P17481 243 aaPredicted RBP19.57■□□□□ 0.72
COL7A1-205ENST00000465238 HOXD11P31277 338 aaPredicted RBP19.57■□□□□ 0.72
COL7A1-205ENST00000465238 BCAR1P56945 870 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 TFDP1Q14186 410 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 SMC1AQ14683 1233 aaKnown RBP19.57■□□□□ 0.72
COL7A1-205ENST00000465238 BMS1Q14692 1282 aaKnown RBP19.57■□□□□ 0.72
COL7A1-205ENST00000465238 ANKRD54Q6NXT1 300 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 GLB1LQ6UWU2 654 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 KSR1Q8IVT5 923 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 MRPL43Q8N983 215 aaKnown RBP19.57■□□□□ 0.72
COL7A1-205ENST00000465238 SYT2Q8N9I0 419 aaPredicted RBP19.57■□□□□ 0.72
COL7A1-205ENST00000465238 EDAQ92838 391 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 TMEM169Q96HH4 297 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 POLR3FQ9H1D9 316 aaPredicted RBP19.57■□□□□ 0.72
COL7A1-205ENST00000465238 IFT122Q9HBG6 1241 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 FAM105AQ9NUU6 356 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 CHMP5Q9NZZ3 219 aa19.57■□□□□ 0.72
COL7A1-205ENST00000465238 ZNF318Q5VUA4 2279 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 ARL2P36404 184 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 AXDND1Q5T1B0 1012 aaPredicted RBP19.56■□□□□ 0.72
COL7A1-205ENST00000465238 RINT1Q6NUQ1 792 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 CCDC73Q6ZRK6 1079 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 RAD54LQ92698 747 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 PANK2Q9BZ23 570 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 S1PR5Q9H228 398 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 KCNH6Q9H252 994 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 AGPAT5Q9NUQ2 364 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 FAM13BQ9NYF5 915 aa19.56■□□□□ 0.72
COL7A1-205ENST00000465238 C2orf71A6NGG8 1288 aa19.55■□□□□ 0.72
COL7A1-205ENST00000465238 ZC3H11AO75152 810 aaKnown RBP eCLIP19.55■□□□□ 0.72
COL7A1-205ENST00000465238 DHX8Q14562 1220 aaKnown RBP19.55■□□□□ 0.72
COL7A1-205ENST00000465238 NOMO2Q5JPE7 1267 aa19.55■□□□□ 0.72
COL7A1-205ENST00000465238 LLGL2Q6P1M3 1020 aa19.55■□□□□ 0.72
COL7A1-205ENST00000465238 SYCE2Q6PIF2 218 aa19.55■□□□□ 0.72
COL7A1-205ENST00000465238 SHC4Q6S5L8 630 aa19.55■□□□□ 0.72
COL7A1-205ENST00000465238 HFE2Q6ZVN8 426 aa19.55■□□□□ 0.72
COL7A1-205ENST00000465238 SRGAP1Q7Z6B7 1085 aa19.55■□□□□ 0.72
COL7A1-205ENST00000465238 RNF149Q8NC42 400 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms