RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 FAM13AO94988 1023 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 ATP6V1G2O95670 118 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 RPL21P46778 160 aaKnown RBP13.39□□□□□ -0.27
HDAC4-208ENST00000463007 MAP3K10Q02779 954 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 CBWD6Q4V339 395 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 CBWD3Q5JTY5 395 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 CBWD5Q5RIA9 395 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 RBM26Q5T8P6 1007 aaKnown RBP13.39□□□□□ -0.27
HDAC4-208ENST00000463007 RSBN1LQ6PCB5 846 aaPredicted RBP13.39□□□□□ -0.27
HDAC4-208ENST00000463007 B3GNT9Q6UX72 402 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 FAM47EQ6ZV65 393 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 HOOK3Q86VS8 718 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 ATP8B4Q8TF62 1192 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 POLR3CQ9BUI4 534 aaPredicted RBP13.39□□□□□ -0.27
HDAC4-208ENST00000463007 PNMA3Q9UL41 463 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 ZBTB21Q9ULJ3 1066 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 DIAPH2O60879 1101 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 KCNA3P22001 575 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 EPHA7Q15375 998 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 ERMARDQ5T6L9 678 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 TRIM68Q6AZZ1 485 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 PPP4R3CPQ6ZMV5 832 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 SYCE1Q8N0S2 351 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 KCTD17Q8N5Z5 321 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 SUPT20HQ8NEM7 779 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 MICAL1Q8TDZ2 1067 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 C1orf54Q8WWF1 131 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 WDR18Q9BV38 432 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 FAM129AQ9BZQ8 928 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 COG5Q9UP83 839 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 ALG6Q9Y672 507 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 EML1O00423 815 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 RASGRF2O14827 1237 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 CALUO43852 315 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-208ENST00000463007 TBC1D12O60347 775 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 GH1P01241 217 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 SPDYE2Q495Y8 402 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 DAB2IPQ5VWQ8 1189 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 MTMR14Q8NCE2 650 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 ACER1Q8TDN7 264 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 FAM151AQ8WW52 585 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 FAM84AQ96KN4 292 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 HSD17B14Q9BPX1 270 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 FOXN3O00409 490 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-208ENST00000463007 SPOPO43791 374 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 AGBL2Q5U5Z8 902 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 CCDC137Q6PK04 289 aaKnown RBP13.38□□□□□ -0.27
HDAC4-208ENST00000463007 UBE2TQ9NPD8 197 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-208ENST00000463007 DONSONQ9NYP3 566 aa13.38□□□□□ -0.27
HDAC4-208ENST00000463007 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.38□□□□□ -0.271e-6■■■■□ 26.1
HDAC4-208ENST00000463007 SUCLA2Q9P2R7 463 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-208ENST00000463007 PSMD10O75832 226 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 FTLP02792 175 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 FKBP1CQ5VVH2 108 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 TRPM8Q7Z2W7 1104 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 CDAN1Q8IWY9 1227 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 HOMEZQ8IX15 550 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 SPIRE2Q8WWL2 714 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 KAT5Q92993 513 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 MIEF2Q96C03 454 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 PABPC3Q9H361 631 aaKnown RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 SLITRK6Q9H5Y7 841 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 ZNF70Q9UC06 446 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 BZW2Q9Y6E2 419 aaKnown RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 ZMYM2Q9UBW7 1377 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 CCDC169A6NNP5 214 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 PPIP5K2O43314 1243 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 EXOC3O60645 756 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 ANP32DO95626 131 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 DLATP10515 647 aaKnown RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 RPL13P26373 211 aaKnown RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 SSTR3P32745 418 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 PPP2R5CQ13362 524 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 GRIPAP1Q4V328 841 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 AGAP11Q8TF27 550 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 ATG4AQ8WYN0 398 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 KLHL29Q96CT2 875 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 CALR3Q96L12 384 aaKnown RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 SIX2Q9NPC8 291 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 ZNF219Q9P2Y4 722 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-208ENST00000463007 STK24Q9Y6E0 443 aa13.37□□□□□ -0.27
HDAC4-208ENST00000463007 IGF2BP3O00425 579 aaKnown RBP eCLIP13.36□□□□□ -0.27
HDAC4-208ENST00000463007 SOX5P35711 763 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 STAT2P52630 851 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 RNASELQ05823 741 aaKnown RBP13.36□□□□□ -0.27
HDAC4-208ENST00000463007 MTM1Q13496 603 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 ZFYVE27Q5T4F4 411 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 OTOP1Q7RTM1 612 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 PRUNE1Q86TP1 453 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 SLC5A5Q92911 643 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 HES6Q96HZ4 224 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 FIZ1Q96SL8 496 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 ASIC3Q9UHC3 531 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 RABGAP1Q9Y3P9 1069 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 ASTN1O14525 1302 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 SSR1P43307 286 aaKnown RBP13.36□□□□□ -0.27
HDAC4-208ENST00000463007 EPC2Q52LR7 807 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 TTC27Q6P3X3 843 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 SLC30A5Q8TAD4 765 aa13.36□□□□□ -0.27
HDAC4-208ENST00000463007 RFFLQ8WZ73 363 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms