RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 CDR2LQ86X02 465 aaPredicted RBP17.14■□□□□ 0.33
LIMS1-210ENST00000449684 ZNF280BQ86YH2 543 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 FAM178BQ8IXR5 827 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 GJD3Q8N144 294 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 VPS52Q8N1B4 723 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 SMG8Q8ND04 991 aaKnown RBP17.14■□□□□ 0.33
LIMS1-210ENST00000449684 IGSF21Q96ID5 467 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 ADPGKQ9BRR6 497 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 POLD4Q9HCU8 107 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 DNAJB4Q9UDY4 337 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 PARP2Q9UGN5 583 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 FAN1Q9Y2M0 1017 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 GIT1Q9Y2X7 761 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 N4BP3O15049 544 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 CXCL14O95715 111 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 BMP15O95972 392 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 PRKCBP05771 671 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 MLH1P40692 756 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 SLC11A1P49279 550 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 EFNA5P52803 228 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 SMAD4Q13485 552 aaKnown RBP17.13■□□□□ 0.33
LIMS1-210ENST00000449684 CUL4AQ13619 759 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 IL17AQ16552 155 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 ARL6IP4Q66PJ3 421 aaKnown RBP17.13■□□□□ 0.33
LIMS1-210ENST00000449684 CDCA2Q69YH5 1023 aaPredicted RBP17.13■□□□□ 0.33
LIMS1-210ENST00000449684 LLGL2Q6P1M3 1020 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 BSNDQ8WZ55 320 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 GAD1Q99259 594 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 TMEM175Q9BSA9 504 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 NT5C3AQ9H0P0 336 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 RNF39Q9H2S5 420 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 STK39Q9UEW8 545 aa17.13■□□□□ 0.33
LIMS1-210ENST00000449684 BARX2Q9UMQ3 279 aaPredicted RBP17.13■□□□□ 0.33
LIMS1-210ENST00000449684 A0A1B0GUA9 196 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 ARL5CA6NH57 179 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 CCDC169A6NNP5 214 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 HIDE1A8MVS5 230 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 MBTPS2O43462 519 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 DDHD2O94830 711 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 AKAP5P24588 427 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 OR1G1P47890 313 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 FAM187BQ17R55 369 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 PPP4R3CPQ6ZMV5 832 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 DDX53Q86TM3 631 aaKnown RBP17.12■□□□□ 0.33
LIMS1-210ENST00000449684 MRPL43Q8N983 215 aaKnown RBP17.12■□□□□ 0.33
LIMS1-210ENST00000449684 RASSF8Q8NHQ8 419 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 DRC1Q96MC2 740 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 RPS6KC1Q96S38 1066 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 POP1Q99575 1024 aaKnown RBP17.12■□□□□ 0.33
LIMS1-210ENST00000449684 FZD8Q9H461 694 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 NXF3Q9H4D5 531 aaKnown RBP17.12■□□□□ 0.33
LIMS1-210ENST00000449684 PRKAG3Q9UGI9 489 aa17.12■□□□□ 0.33
LIMS1-210ENST00000449684 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-210ENST00000449684 K7ERI5 159 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 ACKR2O00590 384 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 SCNN1GP51170 649 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 AFF1P51825 1210 aaKnown RBP17.11■□□□□ 0.33
LIMS1-210ENST00000449684 PEX3P56589 373 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 DMP1Q13316 513 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-210ENST00000449684 GIT2Q14161 759 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 APBB1IPQ7Z5R6 666 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-210ENST00000449684 KCTD17Q8N5Z5 321 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 CALML4Q96GE6 196 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 MSLNLQ96KJ4 702 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 PLIN2Q99541 437 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 KIFC3Q9BVG8 833 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 CLEC1BQ9P126 229 aa17.11■□□□□ 0.33
LIMS1-210ENST00000449684 PRG3Q9Y2Y8 225 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-210ENST00000449684 C2orf71A6NGG8 1288 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 NRP1O14786 923 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 HIP1RO75146 1068 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 GLP2RO95838 553 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 UBA7P41226 1012 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 COASYQ13057 564 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 SMAD2Q15796 467 aaKnown RBP17.1■□□□□ 0.33
LIMS1-210ENST00000449684 RINT1Q6NUQ1 792 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 CABP7Q86V35 215 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 TMEM173Q86WV6 379 aaPredicted RBP17.1■□□□□ 0.33
LIMS1-210ENST00000449684 ADHFE1Q8IWW8 467 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 AK8Q96MA6 479 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 ZFP42Q96MM3 310 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 MMTAG2Q9BU76 263 aaKnown RBP17.1■□□□□ 0.33
LIMS1-210ENST00000449684 KMT5AQ9NQR1 393 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 FOXD4L1Q9NU39 408 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 KLK14Q9P0G3 267 aa17.1■□□□□ 0.33
LIMS1-210ENST00000449684 SPDYE4A6NLX3 237 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 K7ELQ4 463 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-210ENST00000449684 CTSAP10619 480 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 RBM10P98175 930 aaKnown RBP17.09■□□□□ 0.33
LIMS1-210ENST00000449684 SF3A1Q15459 793 aaKnown RBP17.09■□□□□ 0.33
LIMS1-210ENST00000449684 SMRP1Q8NCR6 262 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 AUTS2Q8WXX7 1259 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 CASP10Q92851 521 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 INTS4Q96HW7 963 aaKnown RBP17.09■□□□□ 0.33
LIMS1-210ENST00000449684 RUSC1Q9BVN2 902 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 TIPINQ9BVW5 301 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 COLEC11Q9BWP8 271 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 C1QTNF1Q9BXJ1 281 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 ZBP1Q9H171 429 aa17.09■□□□□ 0.33
LIMS1-210ENST00000449684 PDZD7Q9H5P4 517 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms