RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 NR1I3Q14994 352 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ZNF484Q5JVG2 852 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 CAPN12Q6ZSI9 719 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 C4orf19Q8IY42 314 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 AFAP1L1Q8TED9 768 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 AFG1LQ8WV93 481 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 C17orf102A2RUQ5 167 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 CLCN3P51790 818 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 C2orf54Q08AI8 447 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 LY6KQ17RY6 165 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ILDR1Q86SU0 546 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 PLCB1Q9NQ66 1216 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ADGRG1Q9Y653 693 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 LRRC37A3O60309 1634 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 EXTL3O43909 919 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 VIMP08670 466 aaKnown RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ADORA2BP29275 332 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 PPARDQ03181 441 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 ARL13BQ3SXY8 428 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 CDR2LQ86X02 465 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 PRPF31Q8WWY3 499 aaKnown RBP7.93□□□□□ -1.14
SYNE1-213ENST00000448038 HSPH1Q92598 858 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 PDLIM2Q96JY6 352 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 TRIM7Q9C029 511 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 AGPAT3Q9NRZ7 376 aa7.93□□□□□ -1.14
SYNE1-213ENST00000448038 UCHL3P15374 230 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 ALDH3A1P30838 453 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 PHBP35232 272 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 TRIM72Q6ZMU5 477 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 P3H4Q92791 437 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 PGBD4Q96DM1 585 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 STK33Q9BYT3 514 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SNX9Q9Y5X1 595 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 HEXIM1O94992 359 aaKnown RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 ECEL1O95672 775 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 GBP1P32455 592 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SSTR3P32745 418 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 PSMC1P62191 440 aaKnown RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 COL9A3Q14050 684 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 NIPA1Q7RTP0 329 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 TBC1D31Q96DN5 1066 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 KLRG1Q96E93 195 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 CPSF3Q9UKF6 684 aaKnown RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 IL18RAPO95256 599 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SCP2P22307 547 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 NPTX2P47972 431 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SLC26A2P50443 739 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 PSMC6P62333 389 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SGSM1Q2NKQ1 1148 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 CFAP157Q5JU67 520 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 DARS2Q6PI48 645 aaKnown RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 OTOP1Q7RTM1 612 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 BBS5Q8N3I7 341 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 UHMK1Q8TAS1 419 aaKnown RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 ZNF564Q8TBZ8 553 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 NUP85Q9BW27 656 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 EPB41L5Q9HCM4 733 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 AGPAT5Q9NUQ2 364 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SAMD15Q9P1V8 674 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 POLIQ9UNA4 740 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 MAD1L1Q9Y6D9 718 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SLC9A1P19634 815 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 KLRC1P26715 233 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 PRPSAP1Q14558 356 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SHROOM1Q2M3G4 852 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-213ENST00000448038 NOTUMQ6P988 496 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 RIOX2Q8IUF8 465 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 SLC5A5Q92911 643 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 GCNAQ96QF7 691 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 AGPAT1Q99943 283 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 AP1M1Q9BXS5 423 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 RSPH14Q9UHP6 348 aa7.92□□□□□ -1.14
SYNE1-213ENST00000448038 GLTPD2A6NH11 291 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 RGS16O15492 202 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 ZMYND10O75800 440 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 ITGA4P13612 1032 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 CD44P16070 742 aaKnown RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 NAMPTP43490 491 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 SLC12A2P55011 1212 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 PPP6R3Q5H9R7 873 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 CEP85LQ5SZL2 805 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 TNIP3Q96KP6 325 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 TMEM8AQ9HCN3 771 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 FAM114A2Q9NRY5 505 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 HOMER3Q9NSC5 361 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 ASNSD1Q9NWL6 643 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 ITIH6Q6UXX5 1313 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 MIF4GDA9UHW6 222 aaKnown RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 HLA-DRAP01903 254 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 MXRA7P84157 204 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 DGKZQ13574 1117 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 NCAPGQ9BPX3 1015 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 PDE11AQ9HCR9 933 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 H3BRB1 525 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 NKRFO15226 690 aaKnown RBP eCLIP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 ZBTB24O43167 697 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 ZRANB2O95218 330 aaKnown RBP eCLIP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 NPTXRO95502 500 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms