RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 USP20Q9Y2K6 914 aa26.08■■□□□ 1.77
VARS-217ENST00000440048 SFI1A8K8P3 1242 aa26.07■■□□□ 1.76
VARS-217ENST00000440048 AFF1P51825 1210 aaKnown RBP26.07■■□□□ 1.76
VARS-217ENST00000440048 UBE3AQ05086 875 aa26.07■■□□□ 1.76
VARS-217ENST00000440048 DMP1Q13316 513 aaPredicted RBP26.07■■□□□ 1.76
VARS-217ENST00000440048 ARSHQ5FYA8 562 aa26.07■■□□□ 1.76
VARS-217ENST00000440048 URGCPQ8TCY9 931 aa26.07■■□□□ 1.76
VARS-217ENST00000440048 HLA-CQ95604 372 aa26.07■■□□□ 1.76
VARS-217ENST00000440048 ZNF396Q96N95 335 aaPredicted RBP26.07■■□□□ 1.76
VARS-217ENST00000440048 NXF3Q9H4D5 531 aaKnown RBP26.07■■□□□ 1.76
VARS-217ENST00000440048 PDZD7Q9H5P4 517 aa26.07■■□□□ 1.76
VARS-217ENST00000440048 C17orf75Q9HAS0 396 aa26.07■■□□□ 1.76
VARS-217ENST00000440048 UBN1Q9NPG3 1134 aa26.07■■□□□ 1.76
VARS-217ENST00000440048 TFIP11Q9UBB9 837 aaKnown RBP26.07■■□□□ 1.76
VARS-217ENST00000440048 NPHP3-ACAD11A0A0J9YXS1 232 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 N4BP3O15049 544 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 F13A1P00488 732 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 IRS1P35568 1242 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 BCAR1P56945 870 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 PLCB3Q01970 1234 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 TFF2Q03403 129 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 RNASELQ05823 741 aaKnown RBP26.06■■□□□ 1.76
VARS-217ENST00000440048 PKP1Q13835 747 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 DHX8Q14562 1220 aaKnown RBP26.06■■□□□ 1.76
VARS-217ENST00000440048 TMEM132AQ24JP5 1023 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 RAD54LQ92698 747 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 APOL6Q9BWW8 343 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 NRDE2Q9H7Z3 1164 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 KMT5AQ9NQR1 393 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 SPG21Q9NZD8 308 aa26.06■■□□□ 1.76
VARS-217ENST00000440048 TCF20Q9UGU0 1960 aaKnown RBP26.06■■□□□ 1.76
VARS-217ENST00000440048 K7ERI5 159 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 ZC3H11AO75152 810 aaKnown RBP eCLIP26.05■■□□□ 1.76
VARS-217ENST00000440048 PPM1AP35813 382 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 MCM6Q14566 821 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 STK38Q15208 465 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 GPBP1Q86WP2 473 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 HACE1Q8IYU2 909 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 SLC39A11Q8N1S5 342 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 KRI1Q8N9T8 703 aaKnown RBP26.05■■□□□ 1.76
VARS-217ENST00000440048 LINC00301Q8NCQ3 95 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 ARHGAP28Q9P2N2 729 aa26.05■■□□□ 1.76
VARS-217ENST00000440048 NT5C1B-RDH14C9J2C7 533 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 PLS3P13797 630 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 ALDH7A1P49419 539 aaKnown RBP26.04■■□□□ 1.76
VARS-217ENST00000440048 CACNB1Q02641 598 aaPredicted RBP26.04■■□□□ 1.76
VARS-217ENST00000440048 NT5DC1Q5TFE4 455 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 EEF1DP3Q658K8 133 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 ZNF280BQ86YH2 543 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 MRPS27Q92552 414 aaKnown RBP26.04■■□□□ 1.76
VARS-217ENST00000440048 GAD1Q99259 594 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 GBP3Q9H0R5 595 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 TMEM134Q9H6X4 195 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 TLR9Q9NR96 1032 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 KANSL3Q9P2N6 904 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 LZTS1Q9Y250 596 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 RBM19Q9Y4C8 960 aaKnown RBP26.04■■□□□ 1.76
VARS-217ENST00000440048 PHLPP2Q6ZVD8 1323 aa26.04■■□□□ 1.76
VARS-217ENST00000440048 TDRD15B5MCY1 1934 aaKnown RBP26.04■■□□□ 1.76
VARS-217ENST00000440048 ARL5CA6NH57 179 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 INPPL1O15357 1258 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 SLC16A4O15374 487 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 B4GALT3O60512 393 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 POMCP01189 267 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 AKAP5P24588 427 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 MLH1P40692 756 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 ERVFC1P60507 584 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 FOXD4L6Q3SYB3 417 aaPredicted RBP26.03■■□□□ 1.76
VARS-217ENST00000440048 FOXD4L3Q6VB84 417 aaPredicted RBP26.03■■□□□ 1.76
VARS-217ENST00000440048 TAS1R3Q7RTX0 852 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 SPIRE2Q8WWL2 714 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 LARP4BQ92615 738 aaKnown RBP26.03■■□□□ 1.76
VARS-217ENST00000440048 NTPCRQ9BSD7 190 aaKnown RBP26.03■■□□□ 1.76
VARS-217ENST00000440048 UBE2ZQ9H832 354 aaPredicted RBP26.03■■□□□ 1.76
VARS-217ENST00000440048 DNAJB4Q9UDY4 337 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 CCDC39Q9UFE4 941 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 PUF60Q9UHX1 559 aaKnown RBP26.03■■□□□ 1.76
VARS-217ENST00000440048 GIT1Q9Y2X7 761 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 PCDHGC5Q9Y5F6 944 aa26.03■■□□□ 1.76
VARS-217ENST00000440048 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP26.02■■□□□ 1.76
VARS-217ENST00000440048 SPTLC2O15270 562 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 DDHD2O94830 711 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 GALTP07902 379 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 DDIT3P35638 169 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 TXLNAP40222 546 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 KRT17Q04695 432 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 HYAL1Q12794 435 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 ADGRD2Q7Z7M1 963 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 ZFP42Q96MM3 310 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 REEP2Q9BRK0 252 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 ADPGKQ9BRR6 497 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 MIOSQ9NXC5 875 aa26.02■■□□□ 1.76
VARS-217ENST00000440048 YEATS4O95619 227 aa26.01■■□□□ 1.75
VARS-217ENST00000440048 SLC11A1P49279 550 aa26.01■■□□□ 1.75
VARS-217ENST00000440048 COL19A1Q14993 1142 aa26.01■■□□□ 1.75
VARS-217ENST00000440048 ATF7IP2Q5U623 682 aa26.01■■□□□ 1.75
VARS-217ENST00000440048 TMEM173Q86WV6 379 aaPredicted RBP26.01■■□□□ 1.75
VARS-217ENST00000440048 MICAL1Q8TDZ2 1067 aa26.01■■□□□ 1.75
VARS-217ENST00000440048 ADAMTS19Q8TE59 1207 aa26.01■■□□□ 1.75
VARS-217ENST00000440048 FAM193BQ96PV7 902 aaPredicted RBP26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms