RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 STX17P56962 302 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 ADAM9Q13443 819 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 ZNF568Q3ZCX4 644 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 FBXO47Q5MNV8 452 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 CENPPQ6IPU0 288 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 MSTO1Q9BUK6 570 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 NOC4LQ9BVI4 516 aaKnown RBP11.04□□□□□ -0.64
CD44-207ENST00000425428 IFIH1Q9BYX4 1025 aaKnown RBP11.04□□□□□ -0.64
CD44-207ENST00000425428 ST3GAL5Q9UNP4 418 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 TRAF3IP3Q9Y228 551 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 TNFSF13BQ9Y275 285 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 SIP14410 1827 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 ADGRA3Q8IWK6 1321 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 CNTNAP2Q9UHC6 1331 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 TIMP1P01033 207 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 PIGRP01833 764 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 PFKMP08237 780 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 IQCF3P0C7M6 154 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 KRT13P13646 458 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 NR2F2P24468 414 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 RAB27AP51159 221 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 YARSP54577 528 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 MGAT3Q09327 533 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 NOLC1Q14978 699 aaKnown RBP eCLIP11.03□□□□□ -0.64
CD44-207ENST00000425428 TRIM71Q2Q1W2 868 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 CCDC40Q4G0X9 1142 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 SPATA1Q5VX52 437 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 CEP135Q66GS9 1140 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 SLC27A1Q6PCB7 646 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 MPZL3Q6UWV2 235 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 XXYLT1Q8NBI6 393 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 ENOX1Q8TC92 643 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 DHX38Q92620 1227 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 CEP63Q96MT8 703 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 FIZ1Q96SL8 496 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 ACO2Q99798 780 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 CCDC94Q9BW85 323 aaPredicted RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 TARS2Q9BW92 718 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 CCDC113Q9H0I3 377 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 AGPAT5Q9NUQ2 364 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 AGO2Q9UKV8 859 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 NOC2LQ9Y3T9 749 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 IKBKBO14920 756 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 KIAA0355O15063 1070 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 TSPAN1O60635 241 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 EFCAB14O75071 495 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 NR3C1P04150 777 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 TPM3P06753 285 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 HARSP12081 509 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 CYP2J2P51589 502 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 CCL23P55773 120 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 SPAG1Q07617 926 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 ANKRD40Q6AI12 368 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 C7orf61Q8IZ16 206 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 AOPEPQ8N6M6 819 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 ANP32BQ92688 251 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 PGBD4Q96DM1 585 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 STRA6Q9BX79 667 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 CDHR5Q9HBB8 845 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 METTL14Q9HCE5 456 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 AGPAT3Q9NRZ7 376 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 TBX21Q9UL17 535 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 PADI3Q9ULW8 664 aa11.03□□□□□ -0.64
CD44-207ENST00000425428 R3HCC1Q9Y3T6 440 aaKnown RBP11.03□□□□□ -0.64
CD44-207ENST00000425428 TANC1Q9C0D5 1861 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 A0A1B0GUA9 196 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 CLIC2O15247 247 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 CSDE1O75534 798 aaKnown RBP11.02□□□□□ -0.65
CD44-207ENST00000425428 MCF2P10911 925 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 PRKCSHP14314 528 aaPredicted RBP11.02□□□□□ -0.65
CD44-207ENST00000425428 ARF4P18085 180 aaPredicted RBP11.02□□□□□ -0.65
CD44-207ENST00000425428 BMP6P22004 513 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 CD52P31358 61 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 CYP2C18P33260 490 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 PSMC2P35998 433 aaKnown RBP11.02□□□□□ -0.65
CD44-207ENST00000425428 PPIGQ13427 754 aaKnown RBP eCLIP11.02□□□□□ -0.65
CD44-207ENST00000425428 IKBKEQ14164 716 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 LPIN1Q14693 890 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 SURF1Q15526 300 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 NFIL3Q16649 462 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 ZBTB33Q86T24 672 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 FAM228AQ86W67 206 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 C12orf56Q8IXR9 622 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 GPD1LQ8N335 351 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 GLIS3Q8NEA6 775 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 WNT8BQ93098 351 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 CPB2Q96IY4 423 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 CTAGE1Q96RT6 745 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 FUCA2Q9BTY2 467 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 SRRTQ9BXP5 876 aaKnown RBP11.02□□□□□ -0.65
CD44-207ENST00000425428 MTIF3Q9H2K0 278 aaKnown RBP11.02□□□□□ -0.65
CD44-207ENST00000425428 KCTD10Q9H3F6 313 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 THAP9Q9H5L6 903 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 MINDY3Q9H8M7 445 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 TOPORSQ9NS56 1045 aaPredicted RBP11.02□□□□□ -0.65
CD44-207ENST00000425428 C1orf112Q9NSG2 853 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 HSPBP1Q9NZL4 362 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 NFE2L3Q9Y4A8 694 aa11.02□□□□□ -0.65
CD44-207ENST00000425428 CITO14578 2027 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 ZNF233A6NK53 670 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms