RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 POLR1AO95602 1720 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-207ENST00000419472 KIF15Q9NS87 1388 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 IQSEC2Q5JU85 1478 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 AQP12BA6NM10 295 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 B4E171 279 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 TMCC2O75069 709 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 TGFB3P10600 412 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 KRT9P35527 623 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 TSPAN7P41732 249 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 SLC5A3P53794 718 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 MRPS9P82933 396 aaKnown RBP5.88□□□□□ -1.47
VPS13A-207ENST00000419472 FAM133BQ5BKY9 247 aaKnown RBP5.88□□□□□ -1.47
VPS13A-207ENST00000419472 ITPRIPL1Q6GPH6 555 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 PIP4K2CQ8TBX8 421 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 UCMAQ8WVF2 138 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 DLG3Q92796 817 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 ERCC4Q92889 916 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-207ENST00000419472 SUGCTQ9HAC7 445 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 PCDHB1Q9Y5F3 818 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 TIMM13Q9Y5L4 95 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-207ENST00000419472 ITIH6Q6UXX5 1313 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 NCOA1Q15788 1441 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 STRCQ7RTU9 1775 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 MYO1BO43795 1136 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 CYP17A1P05093 508 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 PARP1P09874 1014 aaKnown RBP5.88□□□□□ -1.47
VPS13A-207ENST00000419472 NOP2P46087 812 aaKnown RBP5.88□□□□□ -1.47
VPS13A-207ENST00000419472 DSC2Q02487 901 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 ARL13BQ3SXY8 428 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 ZPBP2Q6X784 338 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 OR2I1PQ8NGU4 316 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 NUP133Q8WUM0 1156 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 STK31Q9BXU1 1019 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 PDCL3Q9H2J4 239 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 PNPLA8Q9NP80 782 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 PADI4Q9UM07 663 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 TET3O43151 1660 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 KANK1Q14678 1352 aa5.88□□□□□ -1.47
VPS13A-207ENST00000419472 RPRD2Q5VT52 1461 aaKnown RBP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 ARHGAP6O43182 974 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 AHCYL1O43865 530 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 FKTNO75072 461 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 ELF1P32519 619 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 BMP8BP34820 402 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 NR1H2P55055 460 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 FMO1Q01740 532 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 ZACNQ401N2 412 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 RFX8Q6ZV50 586 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 ZZZ3Q8IYH5 903 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 AGGF1Q8N302 714 aaeCLIP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 SH2D3CQ8N5H7 860 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 PCYOX1LQ8NBM8 494 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 SMG8Q8ND04 991 aaKnown RBP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 ANKS1AQ92625 1134 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 RGMAQ96B86 450 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 RRP36Q96EU6 259 aaKnown RBP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 LTV1Q96GA3 475 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 MYL10Q9BUA6 226 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 ASCC2Q9H1I8 757 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 SEMA6CQ9H3T2 930 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 RRAGDQ9NQL2 400 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 STK32BQ9NY57 414 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 IL18RAPO95256 599 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 CELA3BP08861 270 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 DAG1Q14118 895 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 SPATA1Q5VX52 437 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 LRRTM4Q86VH4 590 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 DZIP1LQ8IYY4 767 aaKnown RBP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 FRAT1Q92837 279 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-207ENST00000419472 RNF208Q9H0X6 261 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 CEP83Q9Y592 693 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 EFCAB6Q5THR3 1501 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 IQGAP3Q86VI3 1631 aa5.87□□□□□ -1.47
VPS13A-207ENST00000419472 A0A1W2PPC4 97 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 FSD2A1L4K1 749 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 FAM234BA2RU67 622 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 TSPY2A6NKD2 308 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 NPC1O15118 1278 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 FGF10O15520 208 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 TNFRSF6BO95407 300 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 NFICP08651 508 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 TSPY3P0CV98 308 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 TSPY8P0CW00 308 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 SMCPP49901 116 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 TSPY1Q01534 308 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 COL9A3Q14050 684 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 FAM26FQ5R3K3 315 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 CPOQ8IVL8 374 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 NANOS1Q8WY41 292 aaKnown RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 MUL1Q969V5 352 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 SLC35A4Q96G79 324 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 NUDT16L1Q9BRJ7 211 aaKnown RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 FAM167BQ9BTA0 163 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 ACE2Q9BYF1 805 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 ACSS3Q9H6R3 686 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 ZNF287Q9HBT7 754 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 OGDHLQ9ULD0 1010 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 PLA2G6O60733 806 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 LEFTY1O75610 366 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 MTHFD2P13995 350 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms