RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PPP4R2Q9NY27 417 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 CACNG4Q9UBN1 327 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 LIMD1Q9UGP4 676 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 ARID2Q68CP9 1835 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 ARL5CA6NH57 179 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 SPDYE4A6NLX3 237 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 ASAP2O43150 1006 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 NEMFO60524 1076 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 USO1O60763 962 aaKnown RBP12.88□□□□□ -0.35
USP4-204ENST00000416417 ALDH2P05091 517 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 GLRA2P23416 452 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 AKAP5P24588 427 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 MCM7P33993 719 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 MBTD1Q05BQ5 628 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 AMHR2Q16671 573 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 CABP7Q86V35 215 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 EXOC8Q8IYI6 725 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 B3GALT6Q96L58 329 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 POLR3FQ9H1D9 316 aaPredicted RBP12.88□□□□□ -0.35
USP4-204ENST00000416417 NXF3Q9H4D5 531 aaKnown RBP12.88□□□□□ -0.35
USP4-204ENST00000416417 FAM86C1Q9NVL1 165 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 KLK14Q9P0G3 267 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 DBR1Q9UK59 544 aaKnown RBP12.88□□□□□ -0.35
USP4-204ENST00000416417 USP20Q9Y2K6 914 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 NR2E1Q9Y466 385 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 PPME1Q9Y570 386 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 NPTXRO95502 500 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 ARF4P18085 180 aaPredicted RBP12.87□□□□□ -0.35
USP4-204ENST00000416417 ARL2P36404 184 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 MTHFRP42898 656 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 RARRES1P49788 294 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 TCF15Q12870 199 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 TRIM29Q14134 588 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 KIAA1841Q6NSI8 718 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 COLGALT2Q8IYK4 626 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 RIPOR3Q96MK2 946 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 CCDC43Q96MW1 224 aaKnown RBP12.87□□□□□ -0.35
USP4-204ENST00000416417 MTMR9Q96QG7 549 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 CSRNP2Q9H175 543 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 POLD4Q9HCU8 107 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 DZANK1Q9NVP4 752 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 IRAK3Q9Y616 596 aa12.87□□□□□ -0.35
USP4-204ENST00000416417 CNTNAP2Q9UHC6 1331 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 TTLL13PA6NNM8 815 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 GAS2O43903 313 aaKnown RBP12.86□□□□□ -0.35
USP4-204ENST00000416417 LILRB3O75022 631 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 MED24O75448 989 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 LYPLA2O95372 231 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 SPATA31D3P0C874 917 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 SPATA31C1P0DKV0 1188 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 CLCN4P51793 760 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 TFDP1Q14186 410 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 MXD4Q14582 209 aaPredicted RBP12.86□□□□□ -0.35
USP4-204ENST00000416417 ATAT1Q5SQI0 421 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 NOTUMQ6P988 496 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 SPATA31D4Q6ZUB0 917 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 GLYCTKQ8IVS8 523 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 CCDC83Q8IWF9 413 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 NECTIN4Q96NY8 510 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 TMEM175Q9BSA9 504 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 KCNH6Q9H252 994 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 MRPL17Q9NRX2 175 aaKnown RBP12.86□□□□□ -0.35
USP4-204ENST00000416417 ANKEF1Q9NU02 776 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 ZNF318Q5VUA4 2279 aa12.86□□□□□ -0.35
USP4-204ENST00000416417 LRRIQ4A6NIV6 560 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 DGAT1O75907 488 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 LIG1P18858 919 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 AVPR2P30518 371 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 ZNF174Q15697 407 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 TDRD5Q8NAT2 981 aaKnown RBP12.85□□□□□ -0.35
USP4-204ENST00000416417 HERC2P3Q9BVR0 1158 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 EMILIN2Q9BXX0 1053 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 TRIM6Q9C030 488 aaPredicted RBP12.85□□□□□ -0.35
USP4-204ENST00000416417 CXCL16Q9H2A7 254 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 KANSL3Q9P2N6 904 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 PARP2Q9UGN5 583 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 SORCS3Q9UPU3 1222 aa12.85□□□□□ -0.35
USP4-204ENST00000416417 KMT2EQ8IZD2 1858 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 TEX28O15482 410 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 SOD2P04179 222 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 URODP06132 367 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 AXLP30530 894 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 DSC1Q08554 894 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 MTMR3Q13615 1198 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 GIT2Q14161 759 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 NBR1Q14596 966 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 POTEGQ6S5H5 508 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 GPR149Q86SP6 731 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 CATSPER3Q86XQ3 398 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 IFNLR1Q8IU57 520 aaPredicted RBP12.84□□□□□ -0.35
USP4-204ENST00000416417 CNNM3Q8NE01 707 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 GSTCDQ8NEC7 633 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 RSPH1Q8WYR4 309 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 BSNDQ8WZ55 320 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 GPR62Q9BZJ7 368 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 SFXN1Q9H9B4 322 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 MAN1C1Q9NR34 630 aa12.84□□□□□ -0.35
USP4-204ENST00000416417 RFPL2O75678 378 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 EDN1P05305 212 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 RPL17P18621 184 aaKnown RBP12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms