RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 AGPSO00116 658 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 FDX1P10109 184 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 PEX3P56589 373 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 PSMC5P62195 406 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 SNRPFP62306 86 aaKnown RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 KRT76Q01546 638 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 PRPF4BQ13523 1007 aaKnown RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 SKIDA1Q1XH10 827 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 FAM102BQ5T8I3 360 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 RNF207Q6ZRF8 634 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 GET4Q7L5D6 327 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 DAW1Q8N136 415 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 GIMAP7Q8NHV1 300 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 LNX1Q8TBB1 728 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 CLEC4DQ8WXI8 215 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 N4BP2L2Q92802 583 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 TAAR1Q96RJ0 339 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 RMDN3Q96TC7 470 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 TAF1DQ9H5J8 278 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 DIS3Q9Y2L1 958 aaKnown RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 ZNF536O15090 1300 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 KIF13BQ9NQT8 1826 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 GOLGA6L10A0A0M3HER8 536 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 PPP1R37O75864 691 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 RPS6P62753 249 aaKnown RBP10.4□□□□□ -0.74
COL6A3-204ENST00000392003 CUL1Q13616 776 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 NLRX1Q86UT6 975 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 MYLK4Q86YV6 388 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-204ENST00000392003 SCYL3Q8IZE3 742 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 SLC35G2Q8TBE7 412 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 KCNV2Q8TDN2 545 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 CASKIN2Q8WXE0 1202 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 ATG4CQ96DT6 458 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 ZBTB10Q96DT7 871 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 AP1M1Q9BXS5 423 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 SLC38A10Q9HBR0 1119 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 ZNF541Q9H0D2 1346 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 ZC3H4Q9UPT8 1303 aaKnown RBP10.4□□□□□ -0.74
COL6A3-204ENST00000392003 ANKRD62A6NC57 917 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 PHF20L1A8MW92 1017 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 SLC16A4O15374 487 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 DKC1O60832 514 aaKnown RBP eCLIP10.4□□□□□ -0.74
COL6A3-204ENST00000392003 LYPLA2O95372 231 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 GCLMP48507 274 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 MXI1P50539 228 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 SP4Q02446 784 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 MAP3K10Q02779 954 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 ITGB3BPQ13352 177 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-204ENST00000392003 FBXW10Q5XX13 1052 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 USP37Q86T82 979 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 SULF1Q8IWU6 871 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 C4orf19Q8IY42 314 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 LRRC45Q96CN5 670 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 AGPAT1Q99943 283 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 SPON1Q9HCB6 807 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 RNF146Q9NTX7 359 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 HSPBP1Q9NZL4 362 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 PPP1R9AQ9ULJ8 1098 aa10.4□□□□□ -0.74
COL6A3-204ENST00000392003 MYH11P35749 1972 aa10.4□□□□□ -0.75
COL6A3-204ENST00000392003 A6NNZ2 444 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 FZD9O00144 591 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 ELF1P32519 619 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 RPS6KA3P51812 740 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 BACE1P56817 501 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 CLUL1Q15846 466 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 PPP2R5EQ16537 467 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 TUBB8Q3ZCM7 444 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 OTUD6AQ7L8S5 288 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 SLFN11Q7Z7L1 901 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 NT5DC3Q86UY8 548 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 RHOT2Q8IXI1 618 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 C12orf56Q8IXR9 622 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 TSEN2Q8NCE0 465 aaKnown RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 TRPM4Q8TD43 1214 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 SCFD2Q8WU76 684 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 DCPSQ96C86 337 aaKnown RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 TEPSINQ96N21 525 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 KIF9Q9HAQ2 790 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 ANKEF1Q9NU02 776 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 CTTNBP2NLQ9P2B4 639 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 PCDHGA4Q9Y5G9 962 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 LOXHD1Q8IVV2 1947 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 ZSCAN5CA6NGD5 496 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 FOXN3O00409 490 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 DHX15O43143 795 aaKnown RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 SART1O43290 800 aaKnown RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 BUB1BO60566 1050 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 RPS6KA5O75582 802 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 ERLIN2O94905 339 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 MRPS9P82933 396 aaKnown RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 SNRNP48Q6IEG0 339 aaKnown RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 SLC30A5Q8TAD4 765 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 MICAL1Q8TDZ2 1067 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 ZIM3Q96PE6 472 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 CBWD1Q9BRT8 395 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 STRA6Q9BX79 667 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 ISCUQ9H1K1 167 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 SLITRK6Q9H5Y7 841 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 NENFQ9UMX5 172 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 NCANO14594 1321 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms