RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FAM47EQ6ZV65 393 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 APOBEC3FQ8IUX4 373 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 RHOT1Q8IXI2 618 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 ARHGAP18Q8N392 663 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 SH3RF3Q8TEJ3 882 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.55□□□□□ -0.246e-6■■■■■ 28.9
CCDC88C-204ENST00000389857 HEG1Q9ULI3 1381 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 ANO9A1A5B4 782 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 KRT16P08779 473 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 CRKP46108 304 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 PFKFB3Q16875 520 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 SRPK1Q96SB4 655 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 BPIFA3Q9BQP9 254 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 CDC42BPGQ6DT37 1551 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 PJA2O43164 708 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 PLEKHA8P1O95397 391 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 GSNP06396 782 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 GFPT1Q06210 699 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 KCNH2Q12809 1159 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 CUL4AQ13619 759 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 ANO4Q32M45 955 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 RNF135Q8IUD6 432 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 OTULINQ96BN8 352 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 TJP2Q9UDY2 1190 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 GMNCA6NCL1 334 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 USP17L5A8MUK1 530 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 H0Y3Z8 333 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 KRT14P02533 472 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 CARSP49589 748 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 PDIA2Q13087 525 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 ZNF560Q96MR9 790 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 AIPL1Q9NZN9 384 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 INPP5AQ14642 412 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 TJAP1Q5JTD0 557 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 BTBD8Q5XKL5 378 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 FOPNLQ96NB1 174 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 POLR3FQ9H1D9 316 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 PFASO15067 1338 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 SPDYE5A6NIY4 337 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 LRRC53A6NM62 1247 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 H0Y626 953 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 SLC16A4O15374 487 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 FOXP2O15409 715 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 TRIM16O95361 564 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 SPDYE7PQ495Y7 208 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 SNRNP48Q6IEG0 339 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 SLC13A1Q9BZW2 595 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 GOLPH3LQ9H4A5 285 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 MAD2L2Q9UI95 211 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 CYP2D7A0A087X1C5 515 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 SUPT3HO75486 399 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 MAGEA9P43362 315 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 PKN3Q6P5Z2 889 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 FAM161BQ96MY7 647 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 OLFML3Q9NRN5 406 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 TTC7AQ9ULT0 858 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 BCAR1P56945 870 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 LAMB3Q13751 1172 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 UNC5CLQ8IV45 518 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 EFCAB6Q5THR3 1501 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 CFAP73A6NFT4 308 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 SYTL3Q4VX76 610 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 MEI1Q5TIA1 1274 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 OR6P1Q8NGX9 317 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 C11orf70Q9BRQ4 267 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 RAVER2Q9HCJ3 691 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 C5orf58C9J3I9 102 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 CYBBP04839 570 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 RUBCNQ92622 972 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 SYTL2Q9HCH5 934 aa13.54□□□□□ -0.24
CCDC88C-204ENST00000389857 ADORA2BP29275 332 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 ZBED8Q8IZ13 594 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 TTLL11Q8NHH1 800 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 RNF25Q96BH1 459 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 RMDN1Q96DB5 314 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 INTS2Q9H0H0 1204 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 PTCH1Q13635 1447 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 A0A1B0GW55 424 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DUX4L2P0CJ85 424 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DUX4L3P0CJ86 424 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DUX4L4P0CJ87 422 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DUX4L5P0CJ88 424 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DUX4L6P0CJ89 424 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DUX4L7P0CJ90 424 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 GFAPP14136 432 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 QARSP47897 775 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 CDK17Q00537 523 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DMC1Q14565 340 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 RCSD1Q6JBY9 416 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 GPD1LQ8N335 351 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DUX4Q9UBX2 424 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DCTN4Q9UJW0 460 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 PVALEFA0A1B0GWK0 134 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 HNRNPRO43390 633 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 P4HBP07237 508 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 HSD17B4P51659 736 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 SEMA3FQ13275 785 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 FAM102AQ5T9C2 384 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 KIRREL3Q8IZU9 778 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 OSBPL9Q96SU4 736 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms