RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CREBRFQ8IUR6 639 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 CNGA4Q8IV77 575 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 SPIRE2Q8WWL2 714 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 SEPT8Q92599 483 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 CCDC51Q96ER9 411 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 GDF15Q99988 308 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 SH2D3AQ9BRG2 576 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 NAA15Q9BXJ9 866 aaKnown RBP11.17□□□□□ -0.62
VPS53-202ENST00000389040 SRRTQ9BXP5 876 aaKnown RBP11.17□□□□□ -0.62
VPS53-202ENST00000389040 SEL1LQ9UBV2 794 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 ZMYND8Q9ULU4 1186 aaPredicted RBP11.17□□□□□ -0.62
VPS53-202ENST00000389040 PPP2R2CQ9Y2T4 447 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 GOLGA6L9A6NEM1 432 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 VTNP04004 478 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 GYPCP04921 128 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 SSBP05455 408 aaKnown RBP eCLIP11.16□□□□□ -0.62
VPS53-202ENST00000389040 DARSP14868 501 aaKnown RBP11.16□□□□□ -0.62
VPS53-202ENST00000389040 CSF2RAP15509 400 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 ZNF131P52739 623 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 CCL23P55773 120 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 PTENP60484 403 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 RBM10P98175 930 aaKnown RBP11.16□□□□□ -0.62
VPS53-202ENST00000389040 DMP1Q13316 513 aaPredicted RBP11.16□□□□□ -0.62
VPS53-202ENST00000389040 TRIM14Q14142 442 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 PLEKHG4Q58EX7 1191 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 CNKSR3Q6P9H4 555 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 TOGARAM2Q6ZUX3 1019 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 REXO1L1PQ8IX06 675 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 CSGALNACT2Q8N6G5 542 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 KIAA0895Q8NCT3 520 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 NLRP7Q8WX94 980 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 TSC1Q92574 1164 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 TMEM143Q96AN5 459 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 DUSP9Q99956 384 aaKnown RBP11.16□□□□□ -0.62
VPS53-202ENST00000389040 CHST12Q9NRB3 414 aa11.16□□□□□ -0.62
VPS53-202ENST00000389040 MAGEC2Q9UBF1 373 aaPredicted RBP11.16□□□□□ -0.62
VPS53-202ENST00000389040 MYH9P35579 1960 aaKnown RBP11.16□□□□□ -0.62
VPS53-202ENST00000389040 LGALS16A8MUM7 142 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 FGBP02675 491 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 MAPTP10636 758 aaKnown RBP11.15□□□□□ -0.62
VPS53-202ENST00000389040 PLS3P13797 630 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 SYN1P17600 705 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 AXLP30530 894 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 CASP14P31944 242 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 MAGEA10P43363 369 aaPredicted RBP11.15□□□□□ -0.62
VPS53-202ENST00000389040 UBXN1Q04323 297 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 IKBKEQ14164 716 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 KIZQ2M2Z5 673 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 ARSHQ5FYA8 562 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 PRPF38BQ5VTL8 546 aaKnown RBP11.15□□□□□ -0.62
VPS53-202ENST00000389040 ANKRD40Q6AI12 368 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 SYT10Q6XYQ8 523 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 GPBP1Q86WP2 473 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 RNF149Q8NC42 400 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 CPLX3Q8WVH0 158 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 HPS3Q969F9 1004 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 SCLT1Q96NL6 688 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 IFIH1Q9BYX4 1025 aaKnown RBP11.15□□□□□ -0.62
VPS53-202ENST00000389040 POLR3FQ9H1D9 316 aaPredicted RBP11.15□□□□□ -0.62
VPS53-202ENST00000389040 IFT122Q9HBG6 1241 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 PARVGQ9HBI0 331 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 UMODL1Q5DID0 1318 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 NBNO60934 754 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 HIP1RO75146 1068 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 RPS6KA5O75582 802 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 KRT18P05783 430 aaKnown RBP11.15□□□□□ -0.62
VPS53-202ENST00000389040 CTSHP09668 335 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 GAP43P17677 238 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 GLRA2P23416 452 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 FXR1P51114 621 aaKnown RBP eCLIP11.15□□□□□ -0.62
VPS53-202ENST00000389040 ETF1P62495 437 aaKnown RBP11.15□□□□□ -0.62
VPS53-202ENST00000389040 DRP2Q13474 957 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 LPIN1Q14693 890 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 GPNMBQ14956 572 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 FAM187BQ17R55 369 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 CDCA2Q69YH5 1023 aaPredicted RBP11.15□□□□□ -0.62
VPS53-202ENST00000389040 DYMQ7RTS9 669 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 FAM114A1Q8IWE2 563 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 ZBTB8OSQ8IWT0 167 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 RSPH1Q8WYR4 309 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 DDX12PQ92771 950 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 ZBTB10Q96DT7 871 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 RUSC1Q9BVN2 902 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 TRAIPQ9BWF2 469 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 SLC39A2Q9NP94 309 aa11.15□□□□□ -0.62
VPS53-202ENST00000389040 A0A1W2PQC6 194 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 TBCAO75347 108 aaKnown RBP11.14□□□□□ -0.63
VPS53-202ENST00000389040 SRGAP2CP0DJJ0 459 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 PAK2Q13177 524 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 PSMD2Q13200 908 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 GIT2Q14161 759 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 MBTPS1Q14703 1052 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 PHOSPHO2Q8TCD6 241 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 HERVK_113Q902F9 699 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 SCLYQ96I15 445 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 NLRP4Q96MN2 994 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 OSMRQ99650 979 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 ST6GALNAC4Q9H4F1 302 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 TMEM134Q9H6X4 195 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 PRMT7Q9NVM4 692 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms