RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 APEX2Q9UBZ4 518 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 ZNF215Q9UL58 517 aaPredicted RBP14.55□□□□□ -0.08
HMGB1-202ENST00000339872 GUCA1BQ9UMX6 200 aa14.55□□□□□ -0.08
HMGB1-202ENST00000339872 LRRIQ3A6PVS8 624 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 P4HA2O15460 535 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 PPFIA4O75335 1185 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 GJB1P08034 283 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 MMP3P08254 477 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 EFNA5P52803 228 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 JAM2P57087 298 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 TNFAIP2Q03169 654 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 GFPT1Q06210 699 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 ASTE1Q2TB18 679 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 ZNF484Q5JVG2 852 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 CCDC122Q5T0U0 273 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 PAXIP1Q6ZW49 1069 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 ZBTB8OSQ8IWT0 167 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 ZBTB45Q96K62 511 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 MFSD14AQ96MC6 490 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 C16orf70Q9BSU1 422 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 IFIH1Q9BYX4 1025 aaKnown RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 TMEM117Q9H0C3 514 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 DNAJC12Q9UKB3 198 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 AGO2Q9UKV8 859 aaKnown RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 STYXL1Q9Y6J8 313 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 H3BRB1 525 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 EXTL3O43909 919 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 LCA5LO95447 670 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 C22orf31O95567 290 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 CYP2B6P20813 491 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 VAV2P52735 878 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 CCL14Q16627 93 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 EPC2Q52LR7 807 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 CDCA2Q69YH5 1023 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 SLFN12LQ6IEE8 588 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 USP37Q86T82 979 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 EHBP1Q8NDI1 1231 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 LMO3Q8TAP4 145 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 TMC2Q8TDI7 906 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 ZNF668Q96K58 619 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 NLRP4Q96MN2 994 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 POP1Q99575 1024 aaKnown RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 HAPLN2Q9GZV7 340 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 TUT1Q9H6E5 874 aaKnown RBP14.54□□□□□ -0.08
HMGB1-202ENST00000339872 MGAMO43451 1857 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 ZSWIM8A7E2V4 1837 aa14.54□□□□□ -0.08
HMGB1-202ENST00000339872 RCCD1A6NED2 376 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 ZNF233A6NK53 670 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 TNPO2O14787 897 aaKnown RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 KRT86O43790 486 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 HOXC6P09630 235 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 PNMA6AP0CW24 399 aaPredicted RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 DLATP10515 647 aaKnown RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 MAP2K1Q02750 393 aaPredicted RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 SMC1BQ8NDV3 1235 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 ZIC5Q96T25 663 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 LACRTQ9GZZ8 138 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 CCDC113Q9H0I3 377 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 KIAA1586Q9HCI6 787 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 TOPORSQ9NS56 1045 aaPredicted RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 PCDHA13Q9Y5I0 950 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 F8VZ95 297 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 KIAA0391O15091 583 aaKnown RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 URI1O94763 535 aaPredicted RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 CYP2C19P33261 490 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 RGS2P41220 211 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 ACOT2P49753 483 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 NLRP11P59045 1033 aaKnown RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 MCCD1P59942 119 aaPredicted RBP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 TFDP1Q14186 410 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 DGKDQ16760 1214 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 PHLDB3Q6NSJ2 640 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 ZNF662Q6ZS27 426 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 IRF2BP2Q7Z5L9 587 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 SLC35F6Q8N357 371 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 USP6NLQ92738 828 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.53□□□□□ -0.08
HMGB1-202ENST00000339872 MSTO1Q9BUK6 570 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 C2orf40Q9H1Z8 148 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 TMEM8AQ9HCN3 771 aa14.53□□□□□ -0.08
HMGB1-202ENST00000339872 TTLL13PA6NNM8 815 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 KIF3CO14782 793 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 MSCO60682 206 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 LRRN2O75325 713 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 PRKCBP05771 671 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 HARSP12081 509 aaKnown RBP14.52□□□□□ -0.08
HMGB1-202ENST00000339872 KLRC1P26715 233 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 GTF2F1P35269 517 aaKnown RBP eCLIP14.52□□□□□ -0.08
HMGB1-202ENST00000339872 STAT1P42224 750 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 PTK2Q05397 1052 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 KIF5AQ12840 1032 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 DRAP1Q14919 205 aaPredicted RBP14.52□□□□□ -0.08
HMGB1-202ENST00000339872 MAPK6Q16659 721 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 KRT39Q6A163 491 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 SOCS4Q8WXH5 440 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 APBA2Q99767 749 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 MRPL4Q9BYD3 311 aaKnown RBP14.52□□□□□ -0.08
HMGB1-202ENST00000339872 STK33Q9BYT3 514 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 MYO1AQ9UBC5 1043 aa14.52□□□□□ -0.08
HMGB1-202ENST00000339872 COL1A2P08123 1366 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms