RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 IGBP1P78318 339 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 MYL7Q01449 175 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 PPP3CAQ08209 521 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 TRIM65Q6PJ69 517 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 RHPN2Q8IUC4 686 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 METTL13Q8N6R0 699 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 ZBTB10Q96DT7 871 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 HAPLN2Q9GZV7 340 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 MYO6Q9UM54 1294 aa16.83■□□□□ 0.28
LIMS1-202ENST00000338045 A0A0B4J269 797 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 TNNT1P13805 278 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 PTENP60484 403 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 CYP24A1Q07973 514 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 PPFIA1Q13136 1202 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 DNTTIP2Q5QJE6 756 aaKnown RBP16.82■□□□□ 0.28
LIMS1-202ENST00000338045 MTHFD1LQ6UB35 978 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 IFNLR1Q8IU57 520 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-202ENST00000338045 LMO3Q8TAP4 145 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 KAT2BQ92831 832 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 MRPL4Q9BYD3 311 aaKnown RBP16.82■□□□□ 0.28
LIMS1-202ENST00000338045 FZD8Q9H461 694 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 NHEJ1Q9H9Q4 299 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-202ENST00000338045 AIPL1Q9NZN9 384 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 ARHGAP20Q9P2F6 1191 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 GABRQQ9UN88 632 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 USP20Q9Y2K6 914 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 DAAM1Q9Y4D1 1078 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 ZSWIM8A7E2V4 1837 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 KIF2AO00139 706 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-202ENST00000338045 TUBB4AP04350 444 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 GJB1P08034 283 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 CPT1AP50416 773 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 APLP1P51693 650 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 HSP90AA2PQ14568 343 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-202ENST00000338045 GRIK4Q16099 956 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 MAPK6Q16659 721 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 MARCH8Q5T0T0 291 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 USP37Q86T82 979 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 LENG1Q96BZ8 264 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-202ENST00000338045 AGO2Q9UKV8 859 aaKnown RBP16.82■□□□□ 0.28
LIMS1-202ENST00000338045 FHOD1Q9Y613 1164 aa16.82■□□□□ 0.28
LIMS1-202ENST00000338045 RRN3P2A6NIE6 340 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 ZNF233A6NK53 670 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 LDHAP00338 332 aaKnown RBP16.81■□□□□ 0.28
LIMS1-202ENST00000338045 PRKCBP05771 671 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 CYBAP13498 195 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 AKR1A1P14550 325 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 TMOD1P28289 359 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 GTF2H1P32780 548 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 FLT3LGP49771 235 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 HGSNATQ68CP4 663 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 TRPV1Q8NER1 839 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 TRIB2Q92519 343 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 ZBTB45Q96K62 511 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-202ENST00000338045 FAM213AQ9BRX8 229 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 INTS2Q9H0H0 1204 aaKnown RBP16.81■□□□□ 0.28
LIMS1-202ENST00000338045 REXO2Q9Y3B8 237 aaKnown RBP16.81■□□□□ 0.28
LIMS1-202ENST00000338045 EVPLQ92817 2033 aa16.81■□□□□ 0.28
LIMS1-202ENST00000338045 TTLL13PA6NNM8 815 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 LRRIQ3A6PVS8 624 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 HAS3O00219 553 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 TOM1L1O75674 476 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 CYLC1P35663 651 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 GCLMP48507 274 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 JAM2P57087 298 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 CLDN10P78369 228 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 CETN1Q12798 172 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 MAPK8IP2Q13387 824 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 EPC2Q52LR7 807 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 SFMBT2Q5VUG0 894 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 CRELD2Q6UXH1 353 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 EHBP1Q8NDI1 1231 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 ACRBPQ8NEB7 543 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 NLRP4Q96MN2 994 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 ACO2Q99798 780 aaKnown RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 TMEM117Q9H0C3 514 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 AP5M1Q9H0R1 490 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 IFT122Q9HBG6 1241 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 COQ4Q9Y3A0 265 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 SSU72P8A0A1W2PR75 194 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 EIF3CLB5ME19 914 aaKnown RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 ACKR2O00590 384 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 ABLIM1O14639 778 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 DUSP11O75319 330 aaKnown RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 MXI1P50539 228 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 NLRP11P59045 1033 aaKnown RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 IRX5P78411 483 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 CAP1Q01518 475 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 SP3Q02447 781 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 PRKCZQ05513 592 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 MBTD1Q05BQ5 628 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 PSMD6Q15008 389 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 MFSD14CQ5VZR4 134 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 EIF3CQ99613 913 aaKnown RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 MSTO1Q9BUK6 570 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 TMEM8AQ9HCN3 771 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 APEX2Q9UBZ4 518 aa16.8■□□□□ 0.28
LIMS1-202ENST00000338045 AJAP1Q9UKB5 411 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-202ENST00000338045 NRCAMQ92823 1304 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 CLDN3O15551 220 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms