RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 GOLGA8SH3BPF8 625 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 GUCY1B2O75343 617 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 MMRN1Q13201 1228 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SF3B3Q15393 1217 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 C11orf88Q6PI97 169 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 ANKS3Q6ZW76 656 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 GLMNQ92990 594 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 NUP85Q9BW27 656 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 IMPAD1Q9NX62 359 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 MAN1B1Q9UKM7 699 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 PFASO15067 1338 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 MYO1GB0I1T2 1018 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 PI4K2BG5E9Z4 385 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 CIITAP33076 1130 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 LSP1P33241 339 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SLC9A5Q14940 896 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 POTEEQ6S8J3 1075 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 DDX56Q9NY93 547 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 UBXN8O00124 270 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 HMOX2P30519 316 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 FASTKD1Q53R41 847 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 FAM45AQ8TCE6 357 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SGSM3Q96HU1 749 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 ERAP1Q9NZ08 941 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 LMCD1Q9NZU5 365 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 MAD2L2Q9UI95 211 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 AGBL2Q5U5Z8 902 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SEPT1Q8WYJ6 367 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 ARL8AQ96BM9 186 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 TSPAN17Q96FV3 270 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 DIDO1Q9BTC0 2240 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 LAMC1P11047 1609 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 RGS5O15539 181 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 IL6P05231 212 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 KCNA2P16389 499 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 KRT33BQ14525 404 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 ITIH4Q14624 930 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 METTL23Q86XA0 190 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 ERP27Q96DN0 273 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 NPHS2Q9NP85 383 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 TUBGCP4Q9UGJ1 667 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 UBTFL6P0CB48 400 aaPredicted RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 ANXA13P27216 316 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 RSBN1Q5VWQ0 802 aaPredicted RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 GAS2L3Q86XJ1 694 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 NUP93Q8N1F7 819 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 OTUD7AQ8TE49 926 aaPredicted RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SEC16BQ96JE7 1060 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 FAM193BQ96PV7 902 aaPredicted RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 RBBP8Q99708 897 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 NOD2Q9HC29 1040 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 ZNF532Q9HCE3 1301 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 TSC22D2O75157 780 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 PUDPQ08623 228 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 LRRC59Q96AG4 307 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 MAGED4Q96JG8 741 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 VPS11Q9H270 941 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 RPAP3Q9H6T3 665 aaPredicted RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 MAP3K15Q6ZN16 1313 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SPAG17Q6Q759 2223 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 CENPXA8MT69 81 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 USP1O94782 785 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 CLPTM1O96005 669 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 FCGR1AP12314 374 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 PSMC3P17980 439 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SPOUT1Q5T280 376 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SLFN12LQ6IEE8 588 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 METTL22Q9BUU2 404 aaPredicted RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 MXD3Q9BW11 206 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 KLHL4Q9C0H6 718 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 EXOSC4Q9NPD3 245 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 RTCBQ9Y3I0 505 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 BICRAQ9NZM4 1560 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 CHN1P15882 459 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 ATP5JP18859 108 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 FOXD4Q12950 439 aaPredicted RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 PKN2Q16513 984 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 MRPL48Q96GC5 212 aaKnown RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SERHL2Q9H4I8 314 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SLC40A1Q9NP59 571 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SERHLQ9NQF3 203 aa6.52□□□□□ -1.37
CSMD1-201ENST00000335551 KLHL8Q9P2G9 620 aaPredicted RBP6.52□□□□□ -1.37
CSMD1-201ENST00000335551 SYNMO15061 1565 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PCDH11XQ9BZA7 1347 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PCDH11YQ9BZA8 1340 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CDH16O75309 829 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PURAQ00577 322 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 DDB1Q16531 1140 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ENKURQ8TC29 256 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 TRIM54Q9BYV2 358 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 EPC1Q9H2F5 836 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CLIC4Q9Y696 253 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 FAM170AA1A519 330 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ZBTB7BO15156 539 aaPredicted RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CLASP2O75122 1294 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 FAM200BP0CF97 657 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 COPAP53621 1224 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 C16orf72Q14CZ0 275 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 LRRC36Q1X8D7 754 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CALML6Q8TD86 181 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms