RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 INTS8Q75QN2 995 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 LINC00116Q8NCU8 138 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 C1orf54Q8WWF1 131 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 SLC35C1Q96A29 364 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 TMEM109Q9BVC6 243 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 STMN4Q9H169 189 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 PCMTD2Q9NV79 361 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 CCDC87Q9NVE4 849 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 ANKIB1Q9P2G1 1089 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 DDX25Q9UHL0 483 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 MINPP1Q9UNW1 487 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 RNF8O76064 485 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 EIF6P56537 245 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 GRIK5Q16478 980 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 SLC5A9Q2M3M2 681 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 MUM1Q2TAK8 710 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 KHDC1Q4VXA5 237 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 SFR1Q86XK3 245 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 CLEC10AQ8IUN9 316 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 ASAP3Q8TDY4 903 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 SLC20A1Q8WUM9 679 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 CELF1Q92879 486 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 ART4Q93070 314 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 SLC7A6OSQ96CW6 309 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 RAB3IPQ96QF0 476 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 WDR35Q9P2L0 1181 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 POLD1P28340 1107 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 PABPC4Q13310 644 aaKnown RBP eCLIP14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 MTFR1Q15390 333 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 MIGA2Q7L4E1 593 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 APBB1IPQ7Z5R6 666 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 NAP1L3Q99457 506 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 DDX50Q9BQ39 737 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 SPZ1Q9BXG8 430 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 CTTNBP2NLQ9P2B4 639 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 ERVV-1B6SEH8 477 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 MED24O75448 989 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 TMEM253P0C7T8 217 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 WDR4P57081 412 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 MRPS35P82673 323 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 CCNJLQ8IV13 435 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 EZH1Q92800 747 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 NT5C3AQ9H0P0 336 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 NMRK1Q9NWW6 199 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 DNAJC12Q9UKB3 198 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 NUMBLQ9Y6R0 609 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 PAPPAQ13219 1627 aa14.42□□□□□ -0.1
CCDC88C-201ENST00000331194 CHRNA3P32297 505 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 COILP38432 576 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 RANBP1P43487 201 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 RNF43Q68DV7 783 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 OR52E8Q6IFG1 317 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 FRMD5Q7Z6J6 570 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 LRRC27Q9C0I9 530 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 NPTXRO95502 500 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 DLATP10515 647 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 COMTP21964 271 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 ALDH3A1P30838 453 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 SOX5P35711 763 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 KNOP1Q1ED39 458 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 B4GALNT2Q8NHY0 566 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 MXD3Q9BW11 206 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 TRIM4Q9C037 500 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 LRMDAQ9H2I8 198 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 OCEL1Q9H607 264 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 GPCPD1Q9NPB8 672 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 PICK1Q9NRD5 415 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 PCYOX1Q9UHG3 505 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 WFS1O76024 890 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 NR3C1P04150 777 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 TNFAIP3P21580 790 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 GCLCP48506 637 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 ADCY7P51828 1080 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 RCN2Q14257 317 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 DZIP1Q86YF9 867 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 KLHL23Q8NBE8 558 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 DTX3LQ8TDB6 740 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 NRG4Q8WWG1 115 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 ATG4AQ8WYN0 398 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 MRRFQ96E11 262 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 CEP95Q96GE4 821 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 LRRC37BQ96QE4 947 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 FAM118BQ9BPY3 351 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 TXLNGQ9NUQ3 528 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 NAALADL1Q9UQQ1 740 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 SUGT1Q9Y2Z0 365 aa14.41□□□□□ -0.1
CCDC88C-201ENST00000331194 PODXLO00592 558 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 CTNNA2P26232 953 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 UBE4AQ14139 1066 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 PDCD2Q16342 344 aaPredicted RBP14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 EDRF1Q3B7T1 1238 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 TMEM63BQ5T3F8 832 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 MTHFD1LQ6UB35 978 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 ZC3H3Q8IXZ2 948 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 ACP6Q9NPH0 428 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 INTUQ9ULD6 942 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 NCANO14594 1321 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 FAM196BA6NMK8 535 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 GNPATO15228 680 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms