RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 TRIM43Q96BQ3 446 aaPredicted RBP13.53□□□□□ -0.24
LINC00339-213ENST00000642137 DACH1Q9UI36 760 aa13.53□□□□□ -0.24
LINC00339-213ENST00000642137 NOC2LQ9Y3T9 749 aaKnown RBP13.53□□□□□ -0.24
LINC00339-213ENST00000642137 ALPK3Q96L96 1907 aa13.52□□□□□ -0.24
LINC00339-213ENST00000642137 CSDE1O75534 798 aaKnown RBP13.52□□□□□ -0.25
LINC00339-213ENST00000642137 PIGRP01833 764 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 CD44P16070 742 aaKnown RBP13.52□□□□□ -0.25
LINC00339-213ENST00000642137 CYP2C18P33260 490 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 RFC2P35250 354 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 HOXD13P35453 343 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 TYRO3Q06418 890 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 KCNA1Q09470 495 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 LPIN1Q14693 890 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 AMHR2Q16671 573 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 CENPPQ6IPU0 288 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 ZPBP2Q6X784 338 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 TSHZ1Q6ZSZ6 1077 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 CATSPER4Q7RTX7 472 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 SYCP3Q8IZU3 236 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 ACO2Q99798 780 aaKnown RBP13.52□□□□□ -0.25
LINC00339-213ENST00000642137 MRPL4Q9BYD3 311 aaKnown RBP13.52□□□□□ -0.25
LINC00339-213ENST00000642137 GZF1Q9H116 711 aaPredicted RBP13.52□□□□□ -0.25
LINC00339-213ENST00000642137 CGNQ9P2M7 1197 aaKnown RBP13.52□□□□□ -0.25
LINC00339-213ENST00000642137 PRKAG2Q9UGJ0 569 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 ST3GAL5Q9UNP4 418 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 MAPK8IP1Q9UQF2 711 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 SIP14410 1827 aa13.52□□□□□ -0.25
LINC00339-213ENST00000642137 UMODL1Q5DID0 1318 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 PDXKO00764 312 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 PSMA7O14818 248 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 EVI5O60447 810 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 ERLIN2O94905 339 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 RAG1P15918 1043 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 CCNE1P24864 410 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 ZNF445P59923 1031 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 PRPF4BQ13523 1007 aaKnown RBP13.51□□□□□ -0.25
LINC00339-213ENST00000642137 MBTPS1Q14703 1052 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 GPNMBQ14956 572 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 DPCR1Q3MIW9 517 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 MFSD5Q6N075 450 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 FOXR2Q6PJQ5 311 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 LRSAM1Q6UWE0 723 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 FAM228AQ86W67 206 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 NELFCDQ8IXH7 590 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 PPP1R12CQ9BZL4 782 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 GBP3Q9H0R5 595 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 KCTD10Q9H3F6 313 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 AGO3Q9H9G7 860 aaKnown RBP13.51□□□□□ -0.25
LINC00339-213ENST00000642137 ERVK-5Q9HDB9 667 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 PRDM5Q9NQX1 630 aaPredicted RBP13.51□□□□□ -0.25
LINC00339-213ENST00000642137 CHST12Q9NRB3 414 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 PADI3Q9ULW8 664 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 TRAF3IP3Q9Y228 551 aa13.51□□□□□ -0.25
LINC00339-213ENST00000642137 A0A1B0GUA9 196 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 TGFB1I1O43294 461 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 CALUO43852 315 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-213ENST00000642137 TSPAN1O60635 241 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 NBNO60934 754 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 CAVIN2O95810 425 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 CXCL10P02778 98 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 EDN1P05305 212 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 GHRP10912 638 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 ARF4P18085 180 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-213ENST00000642137 FGFR4P22455 802 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 ITGB8P26012 769 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 ERCC5P28715 1186 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-213ENST00000642137 HOXA11P31270 313 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-213ENST00000642137 CD52P31358 61 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 CCL23P55773 120 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 NFX1Q12986 1120 aaKnown RBP13.5□□□□□ -0.25
LINC00339-213ENST00000642137 PAK2Q13177 524 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 ATF7IP2Q5U623 682 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 SLFN12LQ6IEE8 588 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 TMEM199Q8N511 208 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 GOLGA5Q8TBA6 731 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 TMEM174Q8WUU8 243 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 DPF3Q92784 378 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 APBB2Q92870 758 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 P2RX5Q93086 422 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 BICD1Q96G01 975 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 TARS2Q9BW92 718 aaKnown RBP13.5□□□□□ -0.25
LINC00339-213ENST00000642137 OSBPL7Q9BZF2 842 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 WNT8AQ9H1J5 351 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 SEMA6BQ9H3T3 888 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 PTPRHQ9HD43 1115 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 TYW1Q9NV66 732 aaKnown RBP13.5□□□□□ -0.25
LINC00339-213ENST00000642137 TNFSF13BQ9Y275 285 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 STYXL1Q9Y6J8 313 aa13.5□□□□□ -0.25
LINC00339-213ENST00000642137 CNTNAP2Q9UHC6 1331 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 BICDL2A1A5D9 508 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 TTLL13PA6NNM8 815 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 ANKRD63C9JTQ0 380 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 N4BP3O15049 544 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 TOM1L1O75674 476 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 ZSCAN20P17040 1043 aaPredicted RBP13.49□□□□□ -0.25
LINC00339-213ENST00000642137 GARTP22102 1010 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 PROZP22891 400 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 LIG4P49917 911 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 PAK1Q13153 545 aa13.49□□□□□ -0.25
LINC00339-213ENST00000642137 MYBPC2Q14324 1141 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms