RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 DDX25Q9UHL0 483 aaKnown RBP21.73■■□□□ 1.07
CLN3-262ENST00000637699 FAM186AA6NE01 2351 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 C2CD2LO14523 706 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 NRP1O14786 923 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 PI15O43692 258 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 POMCP01189 267 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 PSMA5P28066 241 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 EVCP57679 992 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 CWF19L1Q69YN2 538 aaKnown RBP21.72■■□□□ 1.07
CLN3-262ENST00000637699 MRPL10Q7Z7H8 261 aaKnown RBP21.72■■□□□ 1.07
CLN3-262ENST00000637699 PRPF31Q8WWY3 499 aaKnown RBP21.72■■□□□ 1.07
CLN3-262ENST00000637699 SLC7A3Q8WY07 619 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 TMEM143Q96AN5 459 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 MBOAT7Q96N66 472 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 SLKQ9H2G2 1235 aaPredicted RBP21.72■■□□□ 1.07
CLN3-262ENST00000637699 MINDY3Q9H8M7 445 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 KCNK12Q9HB15 430 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 MRPL17Q9NRX2 175 aaKnown RBP21.72■■□□□ 1.07
CLN3-262ENST00000637699 KANSL3Q9P2N6 904 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 DENND4AQ7Z401 1863 aa21.72■■□□□ 1.07
CLN3-262ENST00000637699 M0R2N6 131 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 LILRB3O75022 631 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 NPR3P17342 541 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 QARSP47897 775 aaKnown RBP21.71■■□□□ 1.07
CLN3-262ENST00000637699 NONOQ15233 471 aaKnown RBP eCLIP21.71■■□□□ 1.07
CLN3-262ENST00000637699 INF2Q27J81 1249 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 LETM2Q2VYF4 491 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 MOXD1Q6UVY6 613 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 NKD2Q969F2 451 aaPredicted RBP21.71■■□□□ 1.07
CLN3-262ENST00000637699 CEP170P1Q96L14 293 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 AIFM3Q96NN9 605 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 TMEM175Q9BSA9 504 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 BMP2KQ9NSY1 1161 aaPredicted RBP21.71■■□□□ 1.07
CLN3-262ENST00000637699 STK39Q9UEW8 545 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 FBXL21Q9UKT6 434 aa21.71■■□□□ 1.07
CLN3-262ENST00000637699 SLC37A4O43826 429 aa21.7■■□□□ 1.06
CLN3-262ENST00000637699 MYBP10242 640 aa21.7■■□□□ 1.06
CLN3-262ENST00000637699 HOXA11P31270 313 aaPredicted RBP21.7■■□□□ 1.06
CLN3-262ENST00000637699 AK2P54819 239 aa21.7■■□□□ 1.06
CLN3-262ENST00000637699 UBXN11Q5T124 520 aa21.7■■□□□ 1.06
CLN3-262ENST00000637699 SRGAP1Q7Z6B7 1085 aa21.7■■□□□ 1.06
CLN3-262ENST00000637699 PSPC1Q8WXF1 523 aaKnown RBP21.7■■□□□ 1.06
CLN3-262ENST00000637699 LARP6Q9BRS8 491 aaKnown RBP21.7■■□□□ 1.06
CLN3-262ENST00000637699 WRAP73Q9P2S5 460 aaPredicted RBP21.7■■□□□ 1.06
CLN3-262ENST00000637699 DUSP12Q9UNI6 340 aa21.7■■□□□ 1.06
CLN3-262ENST00000637699 PRG3Q9Y2Y8 225 aaPredicted RBP21.7■■□□□ 1.06
CLN3-262ENST00000637699 WDR87Q6ZQQ6 2873 aa21.7■■□□□ 1.06
CLN3-262ENST00000637699 C2orf16Q68DN1 1984 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 CPLX1O14810 134 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 DEXIO95424 95 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 AOC1P19801 751 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 LAMTOR4Q0VGL1 99 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 TOB2Q14106 344 aaPredicted RBP21.69■■□□□ 1.06
CLN3-262ENST00000637699 NPY5RQ15761 445 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 C15orf39Q6ZRI6 1047 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 TAS1R1Q7RTX1 841 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 SIX5Q8N196 739 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 DAGLBQ8NCG7 672 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 MAN1C1Q9NR34 630 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 VAV3Q9UKW4 847 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 CNTNAP2Q9UHC6 1331 aa21.69■■□□□ 1.06
CLN3-262ENST00000637699 NARSO43776 548 aaKnown RBP21.68■■□□□ 1.06
CLN3-262ENST00000637699 DKC1O60832 514 aaKnown RBP eCLIP21.68■■□□□ 1.06
CLN3-262ENST00000637699 SOD2P04179 222 aa21.68■■□□□ 1.06
CLN3-262ENST00000637699 URODP06132 367 aa21.68■■□□□ 1.06
CLN3-262ENST00000637699 OR1G1P47890 313 aa21.68■■□□□ 1.06
CLN3-262ENST00000637699 PPP2R5CQ13362 524 aa21.68■■□□□ 1.06
CLN3-262ENST00000637699 RUFY3Q7L099 469 aa21.68■■□□□ 1.06
CLN3-262ENST00000637699 RPS6KC1Q96S38 1066 aa21.68■■□□□ 1.06
CLN3-262ENST00000637699 DHX33Q9H6R0 707 aaKnown RBP21.68■■□□□ 1.06
CLN3-262ENST00000637699 KCNJ14Q9UNX9 436 aa21.68■■□□□ 1.06
CLN3-262ENST00000637699 CCDC195A0A1B0GUA6 201 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 STK25O00506 426 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 TEX28O15482 410 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 N4BP1O75113 896 aaKnown RBP21.67■■□□□ 1.06
CLN3-262ENST00000637699 P4HBP07237 508 aaKnown RBP21.67■■□□□ 1.06
CLN3-262ENST00000637699 ADH1AP07327 375 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 ITGA4P13612 1032 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 NCLP19338 710 aaKnown RBP21.67■■□□□ 1.06
CLN3-262ENST00000637699 GBP2P32456 591 aaPredicted RBP21.67■■□□□ 1.06
CLN3-262ENST00000637699 RFC5P40937 340 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 STK3Q13188 491 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 GALNT17Q6IS24 598 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 KRT25Q7Z3Z0 450 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 EXOC8Q8IYI6 725 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 CCDC105Q8IYK2 499 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 RNF149Q8NC42 400 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 SMG8Q8ND04 991 aaKnown RBP21.67■■□□□ 1.06
CLN3-262ENST00000637699 RSAD2Q8WXG1 361 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 MARCH5Q9NX47 278 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 IGSF9Q9P2J2 1179 aa21.67■■□□□ 1.06
CLN3-262ENST00000637699 CFHP08603 1231 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 ANGPT1Q15389 498 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 COLGALT2Q8IYK4 626 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 ADSSL1Q8N142 457 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 DTWD2Q8NBA8 298 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 FAM20AQ96MK3 541 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 RTP3Q9BQQ7 232 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 HERC2P3Q9BVR0 1158 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 RNF39Q9H2S5 420 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms