RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 ERLIN2O94905 339 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 P4HBP07237 508 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 CAP2P40123 477 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 UGCGQ16739 394 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 EPC2Q52LR7 807 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 XKR9Q5GH70 373 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 TADA2BQ86TJ2 420 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 CBWD2Q8IUF1 395 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 EFCAB13Q8IY85 973 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 CCT8L2Q96SF2 557 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 EPN3Q9H201 632 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 DAAM1Q9Y4D1 1078 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 GREB1LQ9C091 1923 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 H0YHG0 523 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 DLATP10515 647 aaKnown RBP13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 GUCY2CP25092 1073 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 RARRES1P49788 294 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 PPATQ06203 517 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 PTGISQ16647 500 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 INTS8Q75QN2 995 aaKnown RBP13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 TMC3Q7Z5M5 1100 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 OTUD6BQ8N6M0 293 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 XXYLT1Q8NBI6 393 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 LMO3Q8TAP4 145 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 MDM1Q8TC05 714 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 PLEKHO2Q8TD55 490 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 ACCSQ96QU6 501 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 TAAR1Q96RJ0 339 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 USP20Q9Y2K6 914 aa13.96□□□□□ -0.18
CCDC88A-214ENST00000621814 ATP9AO75110 1047 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 ATP2C2O75185 946 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 COMTP21964 271 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 IFT88Q13099 833 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 FBXW10Q5XX13 1052 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 NLRP14Q86W24 1093 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 ZNF473Q8WTR7 871 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 PCDHB18PQ96TA0 734 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 PDGFDQ9GZP0 370 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 SLITRK6Q9H5Y7 841 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 TOPORSQ9NS56 1045 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 H0YGN5 161 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 SPOPO43791 374 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 MMEP08473 750 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 SLCO1A2P46721 670 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 QARSP47897 775 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 KCNJ1P48048 391 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 MXI1P50539 228 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 SPP2Q13103 211 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 TKFCQ3LXA3 575 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 C2CD6Q53TS8 623 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 CCDC25Q86WR0 208 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 FLAD1Q8NFF5 587 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 FEM1BQ9UK73 627 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 NFS1Q9Y697 457 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 SLX4Q8IY92 1834 aa13.95□□□□□ -0.18
CCDC88A-214ENST00000621814 A0A087WUV0 522 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 SHBGP04278 402 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 ANXA13P27216 316 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 CD302Q8IX05 232 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 DHX38Q92620 1227 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 TMEM206Q9H813 350 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 QSER1Q2KHR3 1735 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 NRXN2Q9P2S2 1712 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 TCRBV7S2A1N4TA0A589 114 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 KRT5P13647 590 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 PLS3P13797 630 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 GPC5P78333 572 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 MRPS9P82933 396 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 CHADLQ6NUI6 762 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 RUFY4Q6ZNE9 571 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 NOP9Q86U38 636 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 FAM160B2Q86V87 743 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 C7orf43Q8WVR3 580 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 RIT2Q99578 217 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 PI4K2AQ9BTU6 479 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 TMEM117Q9H0C3 514 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 CCDC113Q9H0I3 377 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 RAB17Q9H0T7 212 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 CNOT8Q9UFF9 292 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 CAPN7Q9Y6W3 813 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 CNTNAP1P78357 1384 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 ANKRD63C9JTQ0 380 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 ADRB2P07550 413 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 SSTR3P32745 418 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 UBAP2Q5T6F2 1119 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 CCDC105Q8IYK2 499 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 UBL4BQ8N7F7 174 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 MYCBPAPQ8TBZ2 947 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 FBXO25Q8TCJ0 367 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 FAM114A2Q9NRY5 505 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 KCND2Q9NZV8 630 aa13.94□□□□□ -0.18
CCDC88A-214ENST00000621814 DHX15O43143 795 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 RPS6P62753 249 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 SNX1Q13596 522 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 KIF22Q14807 665 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 LMBRD2Q68DH5 695 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 B4GALNT4Q76KP1 1039 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 JAMLQ86YT9 394 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 SEMA4DQ92854 862 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 ERP44Q9BS26 406 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms