RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 STX6O43752 255 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 TSPAN1O60635 241 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 RB1P06400 928 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 CYP11B2P19099 503 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 RAB27AP51159 221 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 MBTD1Q05BQ5 628 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 CLLU1OSQ5K130 101 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 FAM173BQ6P4H8 233 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 ZNF598Q86UK7 904 aaKnown RBP17.71■□□□□ 0.43
BRCA1-228ENST00000618469 IFNLR1Q8IU57 520 aaPredicted RBP17.71■□□□□ 0.43
BRCA1-228ENST00000618469 LRRC43Q8N309 656 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 PRSS33Q8NF86 280 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 CDK5RAP3Q96JB5 506 aa17.71■□□□□ 0.43
BRCA1-228ENST00000618469 GRM6O15303 877 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 EYA4O95677 639 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 HYAL1Q12794 435 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 LONRF3Q496Y0 759 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 KCNK18Q7Z418 384 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 RNF135Q8IUD6 432 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 HELQQ8TDG4 1101 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 BSNDQ8WZ55 320 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 LPPQ93052 612 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 CASD1Q96PB1 797 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 PLIN2Q99541 437 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 TRAIPQ9BWF2 469 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 PLVAPQ9BX97 442 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 NFKBIZQ9BYH8 718 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 PRKAG3Q9UGI9 489 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 DNM3Q9UQ16 869 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 FAM50BQ9Y247 325 aa17.7■□□□□ 0.42
BRCA1-228ENST00000618469 EOMESO95936 686 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 SKIP12755 728 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 POU5F1BQ06416 359 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 PCBP1Q15365 356 aaKnown RBP eCLIP17.69■□□□□ 0.42
BRCA1-228ENST00000618469 CDCA2Q69YH5 1023 aaPredicted RBP17.69■□□□□ 0.42
BRCA1-228ENST00000618469 NOTUMQ6P988 496 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 CABP7Q86V35 215 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 ZBTB8OSQ8IWT0 167 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 P2RX5Q93086 422 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 CPB2Q96IY4 423 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 AK8Q96MA6 479 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 MFSD14AQ96MC6 490 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 PNMA5Q96PV4 448 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 NT5C3AQ9H0P0 336 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 TYW1Q9NV66 732 aaKnown RBP17.69■□□□□ 0.42
BRCA1-228ENST00000618469 PCDHB2Q9Y5E7 798 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 CLIC4Q9Y696 253 aa17.69■□□□□ 0.42
BRCA1-228ENST00000618469 MEIS3P2A8K0S8 358 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 B4GALT5O43286 388 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 MBTPS2O43462 519 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 TBX10O75333 385 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 SSBP05455 408 aaKnown RBP eCLIP17.68■□□□□ 0.42
BRCA1-228ENST00000618469 LAG3P18627 525 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 HOXA11P31270 313 aaPredicted RBP17.68■□□□□ 0.42
BRCA1-228ENST00000618469 GRIN1Q05586 938 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 COL19A1Q14993 1142 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 PPP2R5AQ15172 486 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 AMHR2Q16671 573 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 HYIQ5T013 277 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 UBXN11Q5T124 520 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 KLHL23Q8NBE8 558 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 COLGALT1Q8NBJ5 622 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 RASSF8Q8NHQ8 419 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 KIFC3Q9BVG8 833 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 RUSC1Q9BVN2 902 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 MRPL9Q9BYD2 267 aaKnown RBP17.68■□□□□ 0.42
BRCA1-228ENST00000618469 KCNH6Q9H252 994 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 CWH43Q9H720 699 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 POLD4Q9HCU8 107 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 ALG13Q9NP73 1137 aaKnown RBP17.68■□□□□ 0.42
BRCA1-228ENST00000618469 AAASQ9NRG9 546 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 FAM86C1Q9NVL1 165 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 INPP5FQ9Y2H2 1132 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 PCDHB12Q9Y5F1 795 aa17.68■□□□□ 0.42
BRCA1-228ENST00000618469 ITGB1P05556 798 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 ARF4P18085 180 aaPredicted RBP17.67■□□□□ 0.42
BRCA1-228ENST00000618469 LIG1P18858 919 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 AXLP30530 894 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 NAMPTP43490 491 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 CEBPZQ03701 1054 aaKnown RBP17.67■□□□□ 0.42
BRCA1-228ENST00000618469 NCBP1Q09161 790 aaKnown RBP17.67■□□□□ 0.42
BRCA1-228ENST00000618469 SMAD2Q15796 467 aaKnown RBP17.67■□□□□ 0.42
BRCA1-228ENST00000618469 TMEM119Q4V9L6 283 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 GLB1LQ6UWU2 654 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 LRRC55Q6ZSA7 311 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 THNSL1Q8IYQ7 743 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 DEPTORQ8TB45 409 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 KIFAP3Q92845 792 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 PGBD4Q96DM1 585 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 CCDC51Q96ER9 411 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 IFT74Q96LB3 600 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 LMAN2LQ9H0V9 348 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 C2orf40Q9H1Z8 148 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 PLAGL2Q9UPG8 496 aa17.67■□□□□ 0.42
BRCA1-228ENST00000618469 ZNF623O75123 536 aa17.66■□□□□ 0.42
BRCA1-228ENST00000618469 HIP1RO75146 1068 aa17.66■□□□□ 0.42
BRCA1-228ENST00000618469 MARCKSP29966 332 aaPredicted RBP17.66■□□□□ 0.42
BRCA1-228ENST00000618469 LONP1P36776 959 aaKnown RBP17.66■□□□□ 0.42
BRCA1-228ENST00000618469 PBX3P40426 434 aa17.66■□□□□ 0.42
BRCA1-228ENST00000618469 UBA7P41226 1012 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms