RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 ODR4Q5SWX8 454 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 ZNF598Q86UK7 904 aaKnown RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 CDR2LQ86X02 465 aaPredicted RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 MYCT1Q8N699 235 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 CNNM3Q8NE01 707 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 SEPT8Q92599 483 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 CPB2Q96IY4 423 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 ZBTB45Q96K62 511 aaPredicted RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 ADAM2Q99965 735 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 UBE2OQ9C0C9 1292 aaKnown RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 KMT5AQ9NQR1 393 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 TBC1D7Q9P0N9 293 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 LARSQ9P2J5 1176 aaKnown RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 CHD9Q3L8U1 2897 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 CCDC169A6NNP5 214 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 MEIS3P2A8K0S8 358 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 GRXCR1A8MXD5 290 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 TISP43B9A030 160 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 INO80B-WBP1J3KQ70 363 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 FAM13AO94988 1023 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 PIGRP01833 764 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 MYBP10242 640 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 AMPD3Q01432 767 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 PAK2Q13177 524 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 DMP1Q13316 513 aaPredicted RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 IKBKEQ14164 716 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 PPP2R5AQ15172 486 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 CSPP1Q1MSJ5 1256 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 KMT5BQ4FZB7 885 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 PRPF38BQ5VTL8 546 aaKnown RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 PSRC1Q6PGN9 363 aaPredicted RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 CEP57L1Q8IYX8 460 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 KIAA0895Q8NCT3 520 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 SMG8Q8ND04 991 aaKnown RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 APBB2Q92870 758 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 TOP1MTQ969P6 601 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 IFT74Q96LB3 600 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 ACO2Q99798 780 aaKnown RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 TARS2Q9BW92 718 aaKnown RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 EIF2AQ9BY44 585 aaKnown RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 INO80BQ9C086 356 aaPredicted RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 CXCL16Q9H2A7 254 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 RNF39Q9H2S5 420 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 PDZD7Q9H5P4 517 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 RC3H2Q9HBD1 1191 aaKnown RBP11.65□□□□□ -0.54
LIG1-210ENST00000596332 CHST12Q9NRB3 414 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 SEL1LQ9UBV2 794 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 TBX20Q9UMR3 447 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 PCDHA5Q9Y5H7 936 aa11.65□□□□□ -0.54
LIG1-210ENST00000596332 CNTNAP2Q9UHC6 1331 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 A0A0U1RQF3 1178 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 DENND3A2RUS2 1198 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 GOLGA6L4A6NEF3 574 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 ANKRD63C9JTQ0 380 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 K7ERI5 159 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 FAM189A1O60320 539 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 ZNF623O75123 536 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 BAIAP3O94812 1187 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 RHOBTB3O94955 611 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 ARHGEF15O94989 841 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 PRKCBP05771 671 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 KRT18P05783 430 aaKnown RBP11.64□□□□□ -0.55
LIG1-210ENST00000596332 MYL1P05976 194 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 LINC00271P0C7V0 271 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 IDEP14735 1019 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 GAP43P17677 238 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 SFPQP23246 707 aaKnown RBP eCLIP11.64□□□□□ -0.55
LIG1-210ENST00000596332 ADSSP30520 456 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 EFNA5P52803 228 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 ASIC1P78348 528 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 POSTNQ15063 836 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 PCBP1Q15365 356 aaKnown RBP eCLIP11.64□□□□□ -0.55
LIG1-210ENST00000596332 HERC4Q5GLZ8 1057 aaPredicted RBP11.64□□□□□ -0.55
LIG1-210ENST00000596332 CATSPER4Q7RTX7 472 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 MRPL10Q7Z7H8 261 aaKnown RBP11.64□□□□□ -0.55
LIG1-210ENST00000596332 MAP4K3Q8IVH8 894 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 DEPTORQ8TB45 409 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 ZNF507Q8TCN5 953 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 SCFD1Q8WVM8 642 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 PRIMPOLQ96LW4 560 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 GBP4Q96PP9 640 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 LRRC27Q9C0I9 530 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 C2orf40Q9H1Z8 148 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 PRMT7Q9NVM4 692 aaPredicted RBP11.64□□□□□ -0.55
LIG1-210ENST00000596332 STYXL1Q9Y6J8 313 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 ZMYM2Q9UBW7 1377 aa11.64□□□□□ -0.55
LIG1-210ENST00000596332 PHLPP2Q6ZVD8 1323 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 TGFB1I1O43294 461 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 PRPF6O94906 941 aaKnown RBP11.63□□□□□ -0.55
LIG1-210ENST00000596332 RPN1P04843 607 aaKnown RBP11.63□□□□□ -0.55
LIG1-210ENST00000596332 AFF1P51825 1210 aaKnown RBP11.63□□□□□ -0.55
LIG1-210ENST00000596332 KCNB1Q14721 858 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 BMT2Q1RMZ1 405 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 KANK3Q6NY19 840 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 AGMOQ6ZNB7 445 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 FAM43BQ6ZT52 329 aaPredicted RBP11.63□□□□□ -0.55
LIG1-210ENST00000596332 SLC24A5Q71RS6 500 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 ECHDC2Q86YB7 292 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 FAM178BQ8IXR5 827 aa11.63□□□□□ -0.55
LIG1-210ENST00000596332 CCDC65Q8IXS2 484 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms