RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 INTS4Q96HW7 963 aaKnown RBP16.75■□□□□ 0.27
TRIM28-205ENST00000595028 BHMT2Q9H2M3 363 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 DDX19AQ9NUU7 478 aaKnown RBP16.75■□□□□ 0.27
TRIM28-205ENST00000595028 C5orf42Q9H799 3197 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 LRRIQ4A6NIV6 560 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 DCXO43602 365 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 DNAJB1P25685 340 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 AMHR2Q16671 573 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 UBXN11Q5T124 520 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 ARL6IP4Q66PJ3 421 aaKnown RBP16.74■□□□□ 0.27
TRIM28-205ENST00000595028 CDCA2Q69YH5 1023 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-205ENST00000595028 PTCRAQ6ISU1 281 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-205ENST00000595028 POF1BQ8WVV4 589 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 PHOX2BQ99453 314 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 MMTAG2Q9BU76 263 aaKnown RBP16.74■□□□□ 0.27
TRIM28-205ENST00000595028 PCDHB2Q9Y5E7 798 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 CACNA1AO00555 2505 aa16.74■□□□□ 0.27
TRIM28-205ENST00000595028 VWA3AA6NCI4 1184 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 MEIS3P2A8K0S8 358 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 FGF18O76093 207 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 BMP15O95972 392 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 CDC25AP30304 524 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 AXLP30530 894 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 UBE3AQ05086 875 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 COL19A1Q14993 1142 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 NOTUMQ6P988 496 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 GLB1LQ6UWU2 654 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 THNSL1Q8IYQ7 743 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 BSNDQ8WZ55 320 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 PGBD4Q96DM1 585 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 ZNF558Q96NG5 402 aa16.73■□□□□ 0.27
TRIM28-205ENST00000595028 CNTNAP2Q9UHC6 1331 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 MYH15Q9Y2K3 1946 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 E9PMD0 336 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 EYA4O95677 639 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 ARF4P18085 180 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-205ENST00000595028 IRS1P35568 1242 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 PPM1AP35813 382 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 LONRF3Q496Y0 759 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 KCNT2Q6UVM3 1135 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 MRPL10Q7Z7H8 261 aaKnown RBP16.72■□□□□ 0.27
TRIM28-205ENST00000595028 ZBTB8OSQ8IWT0 167 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 SNX21Q969T3 373 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 PABPC5Q96DU9 382 aaKnown RBP16.72■□□□□ 0.27
TRIM28-205ENST00000595028 CPB2Q96IY4 423 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 INPP5FQ9Y2H2 1132 aa16.72■□□□□ 0.27
TRIM28-205ENST00000595028 GRXCR2A6NFK2 248 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 B4GALT5O43286 388 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 SYT1P21579 422 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 PBX3P40426 434 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 NAMPTP43490 491 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 NCBP1Q09161 790 aaKnown RBP16.71■□□□□ 0.27
TRIM28-205ENST00000595028 PPP2R5AQ15172 486 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 NOMO2Q5JPE7 1267 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 HYIQ5T013 277 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 PPP4R3CPQ6ZMV5 832 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 AGMOQ6ZNB7 445 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 HFE2Q6ZVN8 426 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 KCNK18Q7Z418 384 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 SMG8Q8ND04 991 aaKnown RBP16.71■□□□□ 0.27
TRIM28-205ENST00000595028 CNNM3Q8NE01 707 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 KIFAP3Q92845 792 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 PPP2R3CQ969Q6 453 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 PRIMPOLQ96LW4 560 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 EIF2AQ9BY44 585 aaKnown RBP16.71■□□□□ 0.27
TRIM28-205ENST00000595028 CSRNP2Q9H175 543 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 C2orf40Q9H1Z8 148 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 RSAD1Q9HA92 442 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 TLR9Q9NR96 1032 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 TBC1D13Q9NVG8 400 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 PRMT7Q9NVM4 692 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-205ENST00000595028 DNM3Q9UQ16 869 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 IPPQ9Y573 584 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 MYH11P35749 1972 aa16.71■□□□□ 0.27
TRIM28-205ENST00000595028 ZDBF2Q9HCK1 2354 aa16.71■□□□□ 0.26
TRIM28-205ENST00000595028 TDRD15B5MCY1 1934 aaKnown RBP16.7■□□□□ 0.26
TRIM28-205ENST00000595028 OFD1O75665 1012 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 NCLP19338 710 aaKnown RBP16.7■□□□□ 0.26
TRIM28-205ENST00000595028 PLCB3Q01970 1234 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 HYAL1Q12794 435 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 RESTQ13127 1097 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 ZRSR1Q15695 479 aaKnown RBP16.7■□□□□ 0.26
TRIM28-205ENST00000595028 SLC39A11Q8N1S5 342 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 DEPTORQ8TB45 409 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 URGCPQ8TCY9 931 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 MRPS27Q92552 414 aaKnown RBP16.7■□□□□ 0.26
TRIM28-205ENST00000595028 AK8Q96MA6 479 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 PNMA5Q96PV4 448 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 RUSC1Q9BVN2 902 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 NT5C3AQ9H0P0 336 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 FOXD4L1Q9NU39 408 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 LZTS1Q9Y250 596 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 PCDHGC5Q9Y5F6 944 aa16.7■□□□□ 0.26
TRIM28-205ENST00000595028 NCK2O43639 380 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 ZC3H11AO75152 810 aaKnown RBP eCLIP16.69■□□□□ 0.262e-13■■■□□ 16.2
TRIM28-205ENST00000595028 SF3A1Q15459 793 aaKnown RBP16.69■□□□□ 0.26
TRIM28-205ENST00000595028 FAM187BQ17R55 369 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 TMEM119Q4V9L6 283 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 ADGRD2Q7Z7M1 963 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 KCTD17Q8N5Z5 321 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms