RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 ITGB1P05556 798 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 SRGAP2BP0DMP2 458 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 SCP2P22307 547 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 DNAJB1P25685 340 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 NRIP1P48552 1158 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 ALDH7A1P49419 539 aaKnown RBP11.66□□□□□ -0.54
LIG3-212ENST00000590181 RARRES1P49788 294 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 PTENP60484 403 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 COASYQ13057 564 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 GIT2Q14161 759 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 CTTNQ14247 550 aaKnown RBP11.66□□□□□ -0.54
LIG3-212ENST00000590181 PPP2R5AQ15172 486 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 SPOUT1Q5T280 376 aaKnown RBP11.66□□□□□ -0.54
LIG3-212ENST00000590181 TWF2Q6IBS0 349 aaKnown RBP11.66□□□□□ -0.54
LIG3-212ENST00000590181 GLB1LQ6UWU2 654 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 BRAPQ7Z569 592 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 MRPL10Q7Z7H8 261 aaKnown RBP11.66□□□□□ -0.54
LIG3-212ENST00000590181 ZNF598Q86UK7 904 aaKnown RBP11.66□□□□□ -0.54
LIG3-212ENST00000590181 CATSPER3Q86XQ3 398 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 SPPL3Q8TCT6 385 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 TIPINQ9BVW5 301 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 C2orf40Q9H1Z8 148 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 AGPAT5Q9NUQ2 364 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 TYW1Q9NV66 732 aaKnown RBP11.66□□□□□ -0.54
LIG3-212ENST00000590181 LRWD1Q9UFC0 647 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 SMC3Q9UQE7 1217 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 PCDHGC5Q9Y5F6 944 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 DMDP11532 3685 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 FAM205CA6NFA0 338 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 SRGAP2CP0DJJ0 459 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 SPATA31C1P0DKV0 1188 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 ARL2P36404 184 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 TECP42680 631 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 EFNA5P52803 228 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 VCPP55072 806 aaKnown RBP11.65□□□□□ -0.54
LIG3-212ENST00000590181 CYP4A11Q02928 519 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 SIGLEC14Q08ET2 396 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 CBX2Q14781 532 aaPredicted RBP11.65□□□□□ -0.54
LIG3-212ENST00000590181 ZNF174Q15697 407 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 KRT79Q5XKE5 535 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 PLA2G4FQ68DD2 849 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 NOTUMQ6P988 496 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 DTHD1Q6ZMT9 781 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 APBB1IPQ7Z5R6 666 aaPredicted RBP11.65□□□□□ -0.54
LIG3-212ENST00000590181 IGSF22Q8N9C0 903 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 KLHL23Q8NBE8 558 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 RNF149Q8NC42 400 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 KIFAP3Q92845 792 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 INTS4Q96HW7 963 aaKnown RBP11.65□□□□□ -0.54
LIG3-212ENST00000590181 NLRP4Q96MN2 994 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 ZNF558Q96NG5 402 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 CASD1Q96PB1 797 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 NT5C3AQ9H0P0 336 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 C17orf75Q9HAS0 396 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 FAM105AQ9NUU6 356 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 SPG21Q9NZD8 308 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 WRAP73Q9P2S5 460 aaPredicted RBP11.65□□□□□ -0.54
LIG3-212ENST00000590181 DNM3Q9UQ16 869 aa11.65□□□□□ -0.54
LIG3-212ENST00000590181 PIN4Q9Y237 131 aaKnown RBP11.65□□□□□ -0.54
LIG3-212ENST00000590181 FGF18O76093 207 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 ATP2B1P20020 1258 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 IBSPP21815 317 aaPredicted RBP11.64□□□□□ -0.55
LIG3-212ENST00000590181 GATMP50440 423 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 GUCY1B3Q02153 619 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 PTGDRQ13258 359 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 DRP2Q13474 957 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 FAM187BQ17R55 369 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 FAM102BQ5T8I3 360 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 LARP1BQ659C4 914 aaKnown RBP11.64□□□□□ -0.55
LIG3-212ENST00000590181 RBM23Q86U06 439 aaKnown RBP11.64□□□□□ -0.55
LIG3-212ENST00000590181 THNSL1Q8IYQ7 743 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 C4orf32Q8N8J7 132 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 COLGALT1Q8NBJ5 622 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 URGCPQ8TCY9 931 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 POF1BQ8WVV4 589 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 TMEM143Q96AN5 459 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 RPGRIP1Q96KN7 1286 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 AK8Q96MA6 479 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 PHF7Q9BWX1 381 aaPredicted RBP11.64□□□□□ -0.55
LIG3-212ENST00000590181 TMEM60Q9H2L4 133 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 CWH43Q9H720 699 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 TLR9Q9NR96 1032 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 KCND2Q9NZV8 630 aa11.64□□□□□ -0.55
LIG3-212ENST00000590181 DENND4AQ7Z401 1863 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 CACNA1AO00555 2505 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 ARHGEF35A5YM69 484 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 TMEM150BA6NC51 233 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 INPPL1O15357 1258 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 C1RP00736 705 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 CYP11B2P19099 503 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 NCLP19338 710 aaKnown RBP11.63□□□□□ -0.55
LIG3-212ENST00000590181 GJB2P29033 226 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 HOXA11P31270 313 aaPredicted RBP11.63□□□□□ -0.55
LIG3-212ENST00000590181 ABCD1P33897 745 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 NOMO2Q5JPE7 1267 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 MCTP1Q6DN14 999 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 KCNT2Q6UVM3 1135 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 PPP4R3CPQ6ZMV5 832 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 ZBTB8OSQ8IWT0 167 aa11.63□□□□□ -0.55
LIG3-212ENST00000590181 MRPS27Q92552 414 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms