RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	FAM186B	Q8IYM0	893 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	ASAP3	Q8TDY4	903 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	TMEM143	Q96AN5	459 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	IQCD	Q96DY2	449 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	EIF3C	Q99613	913 aa	Known RBP	16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	TINF2	Q9BSI4	451 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	PARD6B	Q9BYG5	372 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	FAM207A	Q9NSI2	230 aa	Predicted RBP	16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	ARHGAP28	Q9P2N2	729 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	DENND3	A2RUS2	1198 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	NOL4	O94818	638 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	XRCC5	P13010	732 aa	Known RBP	16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	MARK3	P27448	753 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	RFC5	P40937	340 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	ADCYAP1R1	P41586	468 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	INHBE	P58166	350 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	MEA1	Q16626	185 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	DPY19L2P1	Q6NXN4	242 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	ATP8B4	Q8TF62	1192 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	GLG1	Q92896	1179 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	KCNN1	Q92952	543 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	FAM167A	Q96KS9	214 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	PCMTD1	Q96MG8	357 aa	Predicted RBP	16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	CBWD1	Q9BRT8	395 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	MMRN2	Q9H8L6	949 aa		16.78	■□□□□ 0.28
DDX39A-209	ENST00000589318	AFP	P02771	609 aa	Known RBP	16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	GLRA2	P23416	452 aa		16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	ADSS	P30520	456 aa		16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	PLCB4	Q15147	1175 aa		16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	SLC39A4	Q6P5W5	647 aa		16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	MMS22L	Q6ZRQ5	1243 aa		16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	SLC7A3	Q8WY07	619 aa		16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	EMID1	Q96A84	441 aa	Predicted RBP	16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	ZIC5	Q96T25	663 aa		16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	CHP1	Q99653	195 aa		16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	GPBP1L1	Q9HC44	474 aa	Predicted RBP	16.77	■□□□□ 0.28
DDX39A-209	ENST00000589318	ANKRD63	C9JTQ0	380 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	KIF1C	O43896	1103 aa	Known RBP	16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	MAF	O75444	373 aa	Predicted RBP	16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	GH1	P01241	217 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	USP8	P40818	1118 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	SNRPF	P62306	86 aa	Known RBP	16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	LAMC2	Q13753	1193 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	DCAF17	Q5H9S7	520 aa	Predicted RBP	16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	PACS2	Q86VP3	889 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	TMTC1	Q8IUR5	882 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	ZSWIM2	Q8NEG5	633 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	FAM71B	Q8TC56	605 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	BAP1	Q92560	729 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	USP6NL	Q92738	828 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	IFT74	Q96LB3	600 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	TACO1	Q9BSH4	297 aa	Known RBP	16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	CRACR2A	Q9BSW2	395 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	MED4	Q9NPJ6	270 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	PPP2R2C	Q9Y2T4	447 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	PPME1	Q9Y570	386 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	SLC26A2	P50443	739 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	GYS2	P54840	703 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	GSC	P56915	257 aa	Predicted RBP	16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	MAP2K5	Q13163	448 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	DRP2	Q13474	957 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	CYP26C1	Q6V0L0	522 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	PPTC7	Q8NI37	304 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	DESI2	Q9BSY9	194 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	ABHD16B	Q9H3Z7	469 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	SMARCAD1	Q9H4L7	1026 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	PCIF1	Q9H4Z3	704 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	HSPBP1	Q9NZL4	362 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	RAB21	Q9UL25	225 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	FRMD4B	Q9Y2L6	1034 aa		16.76	■□□□□ 0.27
DDX39A-209	ENST00000589318	MGAM	O43451	1857 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318		A0A087WUV0	522 aa	Predicted RBP	16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	IGKV6-21	A0A0C4DH24	114 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	ADCY6	O43306	1168 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	EXOC3	O60645	756 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	ECM2	O94769	699 aa	Predicted RBP	16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	HOXC6	P09630	235 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	SMPD1	P17405	629 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	CNGA1	P29973	690 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	HNRNPH3	P31942	346 aa	Known RBP	16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	APBA1	Q02410	837 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	ACVR2B	Q13705	512 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	CEP112	Q8N8E3	955 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	CCDC102A	Q96A19	550 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	EDEM3	Q9BZQ6	932 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	FLRT1	Q9NZU1	646 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	EXOC7	Q9UPT5	735 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	ADGRG1	Q9Y653	693 aa		16.75	■□□□□ 0.27
DDX39A-209	ENST00000589318	NAMPT	P43490	491 aa		16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	CRHR2	Q13324	411 aa		16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	MKRN4P	Q13434	485 aa	Predicted RBP	16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	HSP90B2P	Q58FF3	399 aa		16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	TCERG1L	Q5VWI1	586 aa		16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	SMC1B	Q8NDV3	1235 aa		16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	AFG1L	Q8WV93	481 aa		16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	HHIPL1	Q96JK4	782 aa		16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	LSM14B	Q9BX40	385 aa	Known RBP	16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	GAN	Q9H2C0	597 aa		16.74	■□□□□ 0.27
DDX39A-209	ENST00000589318	RNF216	Q9NWF9	866 aa	Predicted RBP	16.74	■□□□□ 0.27

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms