RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ZC3H11AO75152 810 aaKnown RBP eCLIP13.72□□□□□ -0.21
SS18-225ENST00000585121 OFD1O75665 1012 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 ITGA4P13612 1032 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 PRPHP41219 470 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 BCAR1P56945 870 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 ADAM15Q13444 863 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 PADI6Q6TGC4 694 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 TMC7Q7Z402 723 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 EFHBQ8N7U6 833 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 TMEM169Q96HH4 297 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 FAM193BQ96PV7 902 aaPredicted RBP13.72□□□□□ -0.21
SS18-225ENST00000585121 C2orf40Q9H1Z8 148 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 RSAD1Q9HA92 442 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 KIAA1024Q9UPX6 916 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 DNM3Q9UQ16 869 aa13.72□□□□□ -0.21
SS18-225ENST00000585121 BDP1A6H8Y1 2624 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 TSPAN1O60635 241 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 SRGAP2BP0DMP2 458 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 CYP11B2P19099 503 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 NCLP19338 710 aaKnown RBP13.71□□□□□ -0.21
SS18-225ENST00000585121 PBX3P40426 434 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 ERVFC1P60507 584 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 MBTD1Q05BQ5 628 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 PPP2R5AQ15172 486 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 TMEM132AQ24JP5 1023 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 PLPP4Q5VZY2 271 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 ADGRD2Q7Z7M1 963 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 SLC39A11Q8N1S5 342 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 IGSF22Q8N9C0 903 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 CPB2Q96IY4 423 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 IFT74Q96LB3 600 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 TCF25Q9BQ70 676 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 GBP3Q9H0R5 595 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 CSRNP2Q9H175 543 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 GPRC5CQ9NQ84 441 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.71□□□□□ -0.21
SS18-225ENST00000585121 TBC1D13Q9NVG8 400 aa13.71□□□□□ -0.21
SS18-225ENST00000585121 FNDC1Q4ZHG4 1894 aaPredicted RBP13.71□□□□□ -0.22
SS18-225ENST00000585121 PDCP20941 246 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 GTF2F1P35269 517 aaKnown RBP eCLIP13.7□□□□□ -0.22
SS18-225ENST00000585121 UBXN11Q5T124 520 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 AGMOQ6ZNB7 445 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 TMEM87AQ8NBN3 555 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 DEPTORQ8TB45 409 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 KIFAP3Q92845 792 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 PRIMPOLQ96LW4 560 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 BHMT2Q9H2M3 363 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 DDX19AQ9NUU7 478 aaKnown RBP13.7□□□□□ -0.22
SS18-225ENST00000585121 PRMT7Q9NVM4 692 aaPredicted RBP13.7□□□□□ -0.22
SS18-225ENST00000585121 STK39Q9UEW8 545 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 CD207Q9UJ71 328 aa13.7□□□□□ -0.22
SS18-225ENST00000585121 NT5C1B-RDH14C9J2C7 533 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 FSCN2O14926 492 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 LINC01565O15544 149 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 IL9P15248 144 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 SSTR3P32745 418 aaPredicted RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 CA8P35219 290 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 LTBRP36941 435 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 SMC1AQ14683 1233 aaKnown RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 CLUL1Q15846 466 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 FAM178BQ8IXR5 827 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 BACH2Q9BYV9 841 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 NRDE2Q9H7Z3 1164 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 IPPQ9Y573 584 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 PCDHGC5Q9Y5F6 944 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 TCF20Q9UGU0 1960 aaKnown RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 MEIS3P2A8K0S8 358 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 PER2O15055 1255 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 NR1I2O75469 434 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 EYA4O95677 639 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 BMP15O95972 392 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 ALDH2P05091 517 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 GALTP07902 379 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 ARF4P18085 180 aaPredicted RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 NAMPTP43490 491 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 ATP2C1P98194 919 aaPredicted RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 SMAD4Q13485 552 aaKnown RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 ZRSR1Q15695 479 aaKnown RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 ECM1Q16610 540 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 MAPK6Q16659 721 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 AMHR2Q16671 573 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 ARL6IP4Q66PJ3 421 aaKnown RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 CDCA2Q69YH5 1023 aaPredicted RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 SLC27A1Q6PCB7 646 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 BRAPQ7Z569 592 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 SMG8Q8ND04 991 aaKnown RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 CDK5RAP3Q96JB5 506 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 EIF2AQ9BY44 585 aaKnown RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 DAXXQ9UER7 740 aaPredicted RBP13.69□□□□□ -0.22
SS18-225ENST00000585121 PRKAG3Q9UGI9 489 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 GIT1Q9Y2X7 761 aa13.69□□□□□ -0.22
SS18-225ENST00000585121 A0A1B0GUA9 196 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 N4BP3O15049 544 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 TBX10O75333 385 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 NPTXRO95502 500 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 LIG1P18858 919 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 EFNA5P52803 228 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 DLX2Q07687 328 aaPredicted RBP13.68□□□□□ -0.22
SS18-225ENST00000585121 DUSP6Q16828 381 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 FAM187BQ17R55 369 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms