RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 BICD1Q96G01 975 aa27.51■■□□□ 1.99
SHMT1-207ENST00000580002 GLT1D1Q96MS3 346 aa27.51■■□□□ 1.99
SHMT1-207ENST00000580002 VPS16Q9H269 839 aa27.51■■□□□ 1.99
SHMT1-207ENST00000580002 LIMA1Q9UHB6 759 aaKnown RBP27.51■■□□□ 1.99
SHMT1-207ENST00000580002 OGDHLQ9ULD0 1010 aa27.51■■□□□ 1.99
SHMT1-207ENST00000580002 PHF24Q9UPV7 400 aa27.51■■□□□ 1.99
SHMT1-207ENST00000580002 GOLGA8IPA6NC78 632 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 GOLGA8JA6NMD2 632 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 PRKCBP05771 671 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 DEKP35659 375 aaKnown RBP27.5■■□□□ 1.99
SHMT1-207ENST00000580002 STRN3Q13033 797 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 CEP135Q66GS9 1140 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 CDR2LQ86X02 465 aaPredicted RBP27.5■■□□□ 1.99
SHMT1-207ENST00000580002 RDH13Q8NBN7 331 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 NOC3LQ8WTT2 800 aaKnown RBP27.5■■□□□ 1.99
SHMT1-207ENST00000580002 KCNN1Q92952 543 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 KCNG1Q9UIX4 513 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 HNRNPDLO14979 420 aaKnown RBP27.5■■□□□ 1.99
SHMT1-207ENST00000580002 CETN3O15182 167 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 CABYRO75952 493 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 UBASH3AP57075 661 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 FILIP1Q7Z7B0 1213 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 SESTD1Q86VW0 696 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 ZBTB8OSQ8IWT0 167 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 SCLT1Q96NL6 688 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 OSMRQ99650 979 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 FZD8Q9H461 694 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 EXOC7Q9UPT5 735 aa27.5■■□□□ 1.99
SHMT1-207ENST00000580002 KBTBD13C9JR72 458 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 H0YCG3 227 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 TEX33O43247 280 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 MNX1P50219 401 aaPredicted RBP27.49■■□□□ 1.99
SHMT1-207ENST00000580002 PTGISQ16647 500 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 TMEM40Q8WWA1 233 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 SAAL1Q96ER3 474 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 CEP63Q96MT8 703 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 TRPV6Q9H1D0 765 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 STARD7Q9NQZ5 370 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 PHLPP2Q6ZVD8 1323 aa27.49■■□□□ 1.99
SHMT1-207ENST00000580002 EFNA5P52803 228 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 COPB1P53618 953 aaKnown RBP27.48■■□□□ 1.99
SHMT1-207ENST00000580002 AMHR2Q16671 573 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 ARMCX5Q6P1M9 558 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 SERINC5Q86VE9 423 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 OSBPL7Q9BZF2 842 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 HSPBP1Q9NZL4 362 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 PHKA2P46019 1235 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 LIG4P49917 911 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 MAPK6Q16659 721 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 U2AF1L4Q8WU68 220 aaKnown RBP27.48■■□□□ 1.99
SHMT1-207ENST00000580002 DHX38Q92620 1227 aaKnown RBP27.48■■□□□ 1.99
SHMT1-207ENST00000580002 ARMC5Q96C12 935 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 C2orf40Q9H1Z8 148 aa27.48■■□□□ 1.99
SHMT1-207ENST00000580002 SIP14410 1827 aa27.47■■□□□ 1.99
SHMT1-207ENST00000580002 LRRC10BA6NIK2 292 aa27.47■■□□□ 1.99
SHMT1-207ENST00000580002 DNM1LO00429 736 aa27.47■■□□□ 1.99
SHMT1-207ENST00000580002 POU5F1BQ06416 359 aa27.47■■□□□ 1.99
SHMT1-207ENST00000580002 NFIL3Q16649 462 aa27.47■■□□□ 1.99
SHMT1-207ENST00000580002 IFNLR1Q8IU57 520 aaPredicted RBP27.47■■□□□ 1.99
SHMT1-207ENST00000580002 ACO2Q99798 780 aaKnown RBP27.47■■□□□ 1.99
SHMT1-207ENST00000580002 TUBGCP2Q9BSJ2 902 aa27.47■■□□□ 1.99
SHMT1-207ENST00000580002 MAGEC2Q9UBF1 373 aaPredicted RBP27.47■■□□□ 1.99
SHMT1-207ENST00000580002 PIGRP01833 764 aa27.46■■□□□ 1.99
SHMT1-207ENST00000580002 MTIF2P46199 727 aaKnown RBP27.46■■□□□ 1.99
SHMT1-207ENST00000580002 CCDC40Q4G0X9 1142 aa27.46■■□□□ 1.99
SHMT1-207ENST00000580002 EEF1DP3Q658K8 133 aa27.46■■□□□ 1.99
SHMT1-207ENST00000580002 SLC43A3Q8NBI5 491 aa27.46■■□□□ 1.99
SHMT1-207ENST00000580002 BORCS6Q96GS4 357 aa27.46■■□□□ 1.99
SHMT1-207ENST00000580002 CPB2Q96IY4 423 aa27.46■■□□□ 1.99
SHMT1-207ENST00000580002 NFKBIZQ9BYH8 718 aa27.46■■□□□ 1.99
SHMT1-207ENST00000580002 ACKR2O00590 384 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 EXOC3O60645 756 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 SGPL1O95470 568 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 TFRCP02786 760 aaKnown RBP27.45■■□□□ 1.99
SHMT1-207ENST00000580002 CTSHP09668 335 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 RPL13P26373 211 aaKnown RBP27.45■■□□□ 1.99
SHMT1-207ENST00000580002 EEF1GP26641 437 aaKnown RBP27.45■■□□□ 1.99
SHMT1-207ENST00000580002 SEZ6Q53EL9 994 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 MIIPQ5JXC2 388 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 ZBTB41Q5SVQ8 909 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 ZBTB33Q86T24 672 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 SLC9A9Q8IVB4 645 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 POMGNT1Q8WZA1 660 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 CRISPLD2Q9H0B8 497 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 ANKFY1Q9P2R3 1169 aa27.45■■□□□ 1.99
SHMT1-207ENST00000580002 A0A1B0GTH6 734 aa27.45■■□□□ 1.98
SHMT1-207ENST00000580002 B4GALT4O60513 344 aa27.45■■□□□ 1.98
SHMT1-207ENST00000580002 FGFR1OPO95684 399 aaKnown RBP27.45■■□□□ 1.98
SHMT1-207ENST00000580002 NR1I3Q14994 352 aa27.45■■□□□ 1.98
SHMT1-207ENST00000580002 PKN2Q16513 984 aaKnown RBP27.45■■□□□ 1.98
SHMT1-207ENST00000580002 ZNF410Q86VK4 478 aa27.45■■□□□ 1.98
SHMT1-207ENST00000580002 C12orf56Q8IXR9 622 aa27.45■■□□□ 1.98
SHMT1-207ENST00000580002 GOLGA5Q8TBA6 731 aa27.45■■□□□ 1.98
SHMT1-207ENST00000580002 DIS3LQ8TF46 1054 aaKnown RBP27.45■■□□□ 1.98
SHMT1-207ENST00000580002 ABLIM1O14639 778 aa27.44■■□□□ 1.98
SHMT1-207ENST00000580002 HARSP12081 509 aaKnown RBP27.44■■□□□ 1.98
SHMT1-207ENST00000580002 PRKCSHP14314 528 aaPredicted RBP27.44■■□□□ 1.98
SHMT1-207ENST00000580002 PRPF4BQ13523 1007 aaKnown RBP27.44■■□□□ 1.98
SHMT1-207ENST00000580002 TAF2Q6P1X5 1199 aa27.44■■□□□ 1.98
SHMT1-207ENST00000580002 CBWD2Q8IUF1 395 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms