RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 DENND3A2RUS2 1198 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 K7ENM7 598 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 PRKCBP05771 671 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 TCTN1Q2MV58 587 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 PSRC1Q6PGN9 363 aaPredicted RBP20.01■□□□□ 0.79
CCDC40-213ENST00000574933 EPM2AIP1Q7L775 607 aaPredicted RBP20.01■□□□□ 0.79
CCDC40-213ENST00000574933 CCDC47Q96A33 483 aaKnown RBP20.01■□□□□ 0.79
CCDC40-213ENST00000574933 TMX1Q9H3N1 280 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 MRPL44Q9H9J2 332 aaKnown RBP20.01■□□□□ 0.79
CCDC40-213ENST00000574933 AGPAT5Q9NUQ2 364 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 EXOC1Q9NV70 894 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 PCDH10Q9P2E7 1040 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 CNTNAP2Q9UHC6 1331 aa20.01■□□□□ 0.79
CCDC40-213ENST00000574933 EIF3DO15371 548 aaKnown RBP eCLIP20■□□□□ 0.79
CCDC40-213ENST00000574933 TSPAN1O60635 241 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 ERLIN2O94905 339 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 FGFR4P22455 802 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 HOXA11P31270 313 aaPredicted RBP20■□□□□ 0.79
CCDC40-213ENST00000574933 EPHB4P54760 987 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 NFX1Q12986 1120 aaKnown RBP20■□□□□ 0.79
CCDC40-213ENST00000574933 TMEM240Q5SV17 173 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 SMARCE1Q969G3 411 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 CCDC51Q96ER9 411 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 TRAIPQ9BWF2 469 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 GTPBP4Q9BZE4 634 aaKnown RBP20■□□□□ 0.79
CCDC40-213ENST00000574933 NUP62CLQ9H1M0 184 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 TBX20Q9UMR3 447 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 PCDHB13Q9Y5F0 798 aa20■□□□□ 0.79
CCDC40-213ENST00000574933 ABHD14A-ACY1A0A1B0GW23 586 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 EFCAB14O75071 495 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 BAIAP3O94812 1187 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 PIGRP01833 764 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 EDN1P05305 212 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 ARF4P18085 180 aaPredicted RBP19.99■□□□□ 0.79
CCDC40-213ENST00000574933 BMP8BP34820 402 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 CASP5P51878 434 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 BMT2Q1RMZ1 405 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 STXBP4Q6ZWJ1 553 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 MAP4K3Q8IVH8 894 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 ZNF507Q8TCN5 953 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 HPS3Q969F9 1004 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 FGFBP2Q9BYJ0 223 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 TSPYL2Q9H2G4 693 aaPredicted RBP19.99■□□□□ 0.79
CCDC40-213ENST00000574933 RMND1Q9NWS8 449 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 TBC1D7Q9P0N9 293 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 KIAA1468Q9P260 1216 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 UBE4BO95155 1302 aa19.99■□□□□ 0.79
CCDC40-213ENST00000574933 A0A1B0GUA9 196 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 FGBP02675 491 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 MYBP10242 640 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 ACRP10323 421 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 ACTN1P12814 892 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 STRN3Q13033 797 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 STK4Q13043 487 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 IKBKEQ14164 716 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 KLHL40Q2TBA0 621 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 ZC2HC1CQ53FD0 456 aaPredicted RBP19.98■□□□□ 0.79
CCDC40-213ENST00000574933 L1TD1Q5T7N2 865 aaKnown RBP19.98■□□□□ 0.79
CCDC40-213ENST00000574933 ZPBP2Q6X784 338 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 RBM43Q6ZSC3 357 aaKnown RBP19.98■□□□□ 0.79
CCDC40-213ENST00000574933 ZNF365Q70YC5 407 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 RTN4RL1Q86UN2 441 aaPredicted RBP19.98■□□□□ 0.79
CCDC40-213ENST00000574933 KIAA0895Q8NCT3 520 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 LINC01599Q8WXQ3 324 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 HERVK_113Q902F9 699 aa19.98■□□□□ 0.79
CCDC40-213ENST00000574933 ERCC4Q92889 916 aaPredicted RBP19.98■□□□□ 0.79
CCDC40-213ENST00000574933 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.98■□□□□ 0.79
CCDC40-213ENST00000574933 MRPL4Q9BYD3 311 aaKnown RBP19.98■□□□□ 0.79
CCDC40-213ENST00000574933 FNDC1Q4ZHG4 1894 aaPredicted RBP19.98■□□□□ 0.79
CCDC40-213ENST00000574933 TTLL13PA6NNM8 815 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 B4GALT5O43286 388 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 MGEA5O60502 916 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 GCNT3O95395 438 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 NCBP1Q09161 790 aaKnown RBP19.97■□□□□ 0.79
CCDC40-213ENST00000574933 PRPF4BQ13523 1007 aaKnown RBP19.97■□□□□ 0.79
CCDC40-213ENST00000574933 CAMK4Q16566 473 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 COBLL1Q53SF7 1204 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 RASIP1Q5U651 963 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 NOTUMQ6P988 496 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 GLIS3Q8NEA6 775 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 ACO2Q99798 780 aaKnown RBP19.97■□□□□ 0.79
CCDC40-213ENST00000574933 PTPRHQ9HD43 1115 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 SLC39A2Q9NP94 309 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 RGS18Q9NS28 235 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 C1orf112Q9NSG2 853 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 PIN4Q9Y237 131 aaKnown RBP19.97■□□□□ 0.79
CCDC40-213ENST00000574933 TNFSF13BQ9Y275 285 aa19.97■□□□□ 0.79
CCDC40-213ENST00000574933 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.96■□□□□ 0.79
CCDC40-213ENST00000574933 ENPP3O14638 875 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 ZSCAN20P17040 1043 aaPredicted RBP19.96■□□□□ 0.79
CCDC40-213ENST00000574933 PROZP22891 400 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 FAM189BP81408 668 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 NFKBIBQ15653 356 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 SKOR2Q2VWA4 1001 aaPredicted RBP19.96■□□□□ 0.79
CCDC40-213ENST00000574933 TRIML1Q8N9V2 468 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 SCFD1Q8WVM8 642 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 ACCSQ96QU6 501 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 ADAM2Q99965 735 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 MAN1B1Q9UKM7 699 aa19.96■□□□□ 0.79
CCDC40-213ENST00000574933 ANK1P16157 1881 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms