RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 DYTNA2CJ06 578 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 GRM8O00222 908 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 PLD2O14939 933 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 DLX3O60479 287 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 TOMM70O94826 608 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 TBC1D8O95759 1140 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 SCG5P05408 212 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 TYRP1P17643 537 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 CCT4P50991 539 aaKnown RBP7.14□□□□□ -1.27
VPS53-212ENST00000572259 C1QTNF8P60827 252 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 SUMO1P63165 101 aaKnown RBP7.14□□□□□ -1.27
VPS53-212ENST00000572259 MAP4K2Q12851 820 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 IFIT5Q13325 482 aaKnown RBP7.14□□□□□ -1.27
VPS53-212ENST00000572259 PUM3Q15397 648 aaKnown RBP7.14□□□□□ -1.27
VPS53-212ENST00000572259 CCDC57Q2TAC2 916 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 RTP2Q5QGT7 225 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 FOXB2Q5VYV0 432 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 RCSD1Q6JBY9 416 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 ZBED9Q6R2W3 1325 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 KRT77Q7Z794 578 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 PPM1KQ8N3J5 372 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 TMEM145Q8NBT3 493 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 JPH3Q8WXH2 748 aaPredicted RBP7.14□□□□□ -1.27
VPS53-212ENST00000572259 ARHGAP45Q92619 1136 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 CELF1Q92879 486 aaKnown RBP7.14□□□□□ -1.27
VPS53-212ENST00000572259 SKA1Q96BD8 255 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 CCDC120Q96HB5 630 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 KIF16BQ96L93 1317 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 GPR101Q96P66 508 aaPredicted RBP7.14□□□□□ -1.27
VPS53-212ENST00000572259 PUS7LQ9H0K6 701 aaKnown RBP7.14□□□□□ -1.27
VPS53-212ENST00000572259 RTL9Q8NET4 1388 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 TRBV23OR9-2A0A075B6M9 112 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 SCO2A0A1W2PP80 73 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 FZD9O00144 591 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 GPR39O43194 453 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 HIP1RO75146 1068 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 CAPNS1P04632 268 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 THBDP07204 575 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 CSF1RP07333 972 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 ZSCAN20P17040 1043 aaPredicted RBP7.13□□□□□ -1.27
VPS53-212ENST00000572259 PAMP19021 973 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 RARSP54136 660 aaKnown RBP7.13□□□□□ -1.27
VPS53-212ENST00000572259 DUSP4Q13115 394 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 TNIP1Q15025 636 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 CCDC96Q2M329 555 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 CC2D1AQ6P1N0 951 aaPredicted RBP7.13□□□□□ -1.27
VPS53-212ENST00000572259 OLFM4Q6UX06 510 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 ZPBP2Q6X784 338 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 MMS22LQ6ZRQ5 1243 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 AGBL5Q8NDL9 886 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 COPS5Q92905 334 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 GJA10Q969M2 543 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 OSBP2Q969R2 916 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 MPP4Q96JB8 637 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 EXOC2Q96KP1 924 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 ALPK1Q96QP1 1244 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 ANKRD2Q9GZV1 360 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 NCOA5Q9HCD5 579 aaKnown RBP7.13□□□□□ -1.27
VPS53-212ENST00000572259 LUC7LQ9NQ29 371 aaKnown RBP7.13□□□□□ -1.27
VPS53-212ENST00000572259 PLCB1Q9NQ66 1216 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 CLIC5Q9NZA1 410 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 CLEC1BQ9P126 229 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 PGAP2Q9UHJ9 254 aa7.13□□□□□ -1.27
VPS53-212ENST00000572259 XDHP47989 1333 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 NPHP3-ACAD11A0A0J9YXS1 232 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 TMEM82A0PJX8 343 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 FGF10O15520 208 aaPredicted RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 MEFVO15553 781 aaPredicted RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 DDNO94850 711 aaPredicted RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 KCNJ4P48050 445 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 PRELPP51888 382 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 ZNF280AP59817 542 aaPredicted RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 KIAA2012Q0VF49 1180 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 CBX2Q14781 532 aaPredicted RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 PLCL1Q15111 1095 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 PRSS53Q2L4Q9 553 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 HLA-DQA1Q5Y7H0 255 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 IQCEQ6IPM2 695 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 CYP2R1Q6VVX0 501 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 USP53Q70EK8 1073 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 GET4Q7L5D6 327 aaPredicted RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 STRA8Q7Z7C7 330 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 LRRTM3Q86VH5 581 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 SPATS2Q86XZ4 545 aaKnown RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 GPC2Q8N158 579 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 FCRL2Q96LA5 508 aaPredicted RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 TTC14Q96N46 770 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 PTCHD1Q96NR3 888 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 ADAMTS10Q9H324 1103 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 GREM2Q9H772 168 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 NMRK2Q9NPI5 230 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 PAK6Q9NQU5 681 aaPredicted RBP7.12□□□□□ -1.27
VPS53-212ENST00000572259 PRDM7Q9NQW5 492 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 SCN4AP35499 1836 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 TIAM2Q8IVF5 1701 aa7.12□□□□□ -1.27
VPS53-212ENST00000572259 BRINP1O60477 761 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 UFL1O94874 794 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 APPP05067 770 aa7.11□□□□□ -1.27
VPS53-212ENST00000572259 UBTFL1P0CB47 393 aaPredicted RBP7.11□□□□□ -1.27
VPS53-212ENST00000572259 PLS3P13797 630 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms