RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CDK17Q00537 523 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 MAPK7Q13164 816 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 ACVR2BQ13705 512 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 ARID5BQ14865 1188 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 TARBP2Q15633 366 aaKnown RBP8.72□□□□□ -1.01
VPS39-213ENST00000570062 UGCGQ16739 394 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 LY6KQ17RY6 165 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 DUSP28Q4G0W2 176 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 HSP90AA4PQ58FG1 418 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 MORN1Q5T089 497 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 UTP14CQ5TAP6 766 aaKnown RBP8.72□□□□□ -1.01
VPS39-213ENST00000570062 CYP26C1Q6V0L0 522 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.72□□□□□ -1.01
VPS39-213ENST00000570062 CCDC170Q8IYT3 715 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 NEK11Q8NG66 645 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 SYN2Q92777 582 aaPredicted RBP8.72□□□□□ -1.01
VPS39-213ENST00000570062 FGD4Q96M96 766 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 FIZ1Q96SL8 496 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 SPSB2Q99619 263 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 AGPAT3Q9NRZ7 376 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 INTS13Q9NVM9 706 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 FBXL5Q9UKA1 691 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 MYO6Q9UM54 1294 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 PDE4DIPQ5VU43 2346 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 PARP14Q460N5 1801 aa8.71□□□□□ -1.01
VPS39-213ENST00000570062 RRN3P2A6NIE6 340 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 SFI1A8K8P3 1242 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 ZBTB39O15060 712 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 PMM2O15305 246 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 TGFB1I1O43294 461 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 EXOC3O60645 756 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 COBLO75128 1261 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 RPLP2P05387 115 aaKnown RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 FECHP22830 423 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 ANXA13P27216 316 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 HOXD10P28358 340 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 NMT1P30419 496 aaKnown RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 GTF2H1P32780 548 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 KRT9P35527 623 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 ARL2P36404 184 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 NPTX2P47972 431 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 NPEPPSP55786 919 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 FCGRTP55899 365 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 MCCD1P59942 119 aaPredicted RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 KRT83P78385 493 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 CCZ1BP86790 482 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 CCZ1P86791 482 aaPredicted RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 POU5F1Q01860 360 aaKnown RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 RBL2Q08999 1139 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 HIC1Q14526 733 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 KIF22Q14807 665 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 EMC2Q15006 297 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 SYCP1Q15431 976 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 DGKDQ16760 1214 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 MTERF2Q49AM1 385 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 MIIPQ5JXC2 388 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 PLA2G2CQ5R387 149 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 CEP135Q66GS9 1140 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 TAPT1Q6NXT6 567 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 ARMCX5Q6P1M9 558 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 METTL3Q86U44 580 aaKnown RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 MAP4K3Q8IVH8 894 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 ZBTB8OSQ8IWT0 167 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 FAM186BQ8IYM0 893 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 DAW1Q8N136 415 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 TC2NQ8N9U0 490 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 XXYLT1Q8NBI6 393 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 TMEM161BQ8NDZ6 487 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 DEPTORQ8TB45 409 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 PSPC1Q8WXF1 523 aaKnown RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 LUC7LQ9NQ29 371 aaKnown RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 PLCB1Q9NQ66 1216 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 TBX20Q9UMR3 447 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 BZW2Q9Y6E2 419 aaKnown RBP8.71□□□□□ -1.02
VPS39-213ENST00000570062 OTOFQ9HC10 1997 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 ADGRA2Q96PE1 1338 aa8.71□□□□□ -1.02
VPS39-213ENST00000570062 DENND3A2RUS2 1198 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 K7ERI5 159 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 IGF2BP3O00425 579 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS39-213ENST00000570062 TNPO2O14787 897 aaKnown RBP8.7□□□□□ -1.02
VPS39-213ENST00000570062 GNRH1P01148 92 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 PIGRP01833 764 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 HNRNPH3P31942 346 aaKnown RBP8.7□□□□□ -1.02
VPS39-213ENST00000570062 CASP14P31944 242 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 CYLC1P35663 651 aaPredicted RBP8.7□□□□□ -1.02
VPS39-213ENST00000570062 RGS19P49795 217 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 CPT1AP50416 773 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 CASP5P51878 434 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 SP4Q02446 784 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 KCNH2Q12809 1159 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 PCBP1Q15365 356 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS39-213ENST00000570062 KYAT1Q16773 422 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 DNTTIP2Q5QJE6 756 aaKnown RBP8.7□□□□□ -1.02
VPS39-213ENST00000570062 PLA2G4FQ68DD2 849 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 ZPBP2Q6X784 338 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 GBP6Q6ZN66 633 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 EEPD1Q7L9B9 569 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 CACNA2D4Q7Z3S7 1137 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 APBB1IPQ7Z5R6 666 aaPredicted RBP8.7□□□□□ -1.02
VPS39-213ENST00000570062 FBXO16Q8IX29 292 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms