RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 ATP2C1P98194 919 aaPredicted RBP16.02■□□□□ 0.16
COMMD4-225ENST00000569245 PCBP1Q15365 356 aaKnown RBP eCLIP16.02■□□□□ 0.16
COMMD4-225ENST00000569245 IL17AQ16552 155 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 ECM1Q16610 540 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 GLB1LQ6UWU2 654 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 LRRC55Q6ZSA7 311 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 COLGALT1Q8NBJ5 622 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 SPPL3Q8TCT6 385 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 MICAL1Q8TDZ2 1067 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 POF1BQ8WVV4 589 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 BHMT2Q9H2M3 363 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 CWH43Q9H720 699 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 INPP5FQ9Y2H2 1132 aa16.02■□□□□ 0.16
COMMD4-225ENST00000569245 VWA3AA6NCI4 1184 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 TSPAN1O60635 241 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 FGF18O76093 207 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 ATF7P17544 494 aaPredicted RBP16.01■□□□□ 0.15
COMMD4-225ENST00000569245 KCNA5P22460 613 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 HOXA11P31270 313 aaPredicted RBP16.01■□□□□ 0.15
COMMD4-225ENST00000569245 KCNQ1P51787 676 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 POU5F1BQ06416 359 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 ARL6IP4Q66PJ3 421 aaKnown RBP16.01■□□□□ 0.15
COMMD4-225ENST00000569245 ZNF558Q96NG5 402 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 MRPL9Q9BYD2 267 aaKnown RBP16.01■□□□□ 0.15
COMMD4-225ENST00000569245 IGFLR1Q9H665 355 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 UBE2ZQ9H832 354 aaPredicted RBP16.01■□□□□ 0.15
COMMD4-225ENST00000569245 PCDHA7Q9UN72 937 aa16.01■□□□□ 0.15
COMMD4-225ENST00000569245 ZNF623O75123 536 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 DNAJB1P25685 340 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 AXLP30530 894 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 PBX3P40426 434 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 UBE2HP62256 183 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 RNASELQ05823 741 aaKnown RBP16■□□□□ 0.15
COMMD4-225ENST00000569245 MBTD1Q05BQ5 628 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 TMEM132AQ24JP5 1023 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 ADALQ6DHV7 355 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 NOTUMQ6P988 496 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 KCNT2Q6UVM3 1135 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 ZBTB8OSQ8IWT0 167 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 PPP2R3CQ969Q6 453 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 CPB2Q96IY4 423 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 NFKBIZQ9BYH8 718 aa16■□□□□ 0.15
COMMD4-225ENST00000569245 TRIM6Q9C030 488 aaPredicted RBP16■□□□□ 0.15
COMMD4-225ENST00000569245 PUF60Q9UHX1 559 aaKnown RBP16■□□□□ 0.15
COMMD4-225ENST00000569245 A0A1W2PQ27 194 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 A0A1W2PQ64 194 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 A0A1W2PQD8 194 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 MEIS3P2A8K0S8 358 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 E9PMD0 336 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 NCK2O43639 380 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 GADD45BO75293 160 aaPredicted RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 LIG1P18858 919 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 MARCKSP29966 332 aaPredicted RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 ME1P48163 572 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 ALDH7A1P49419 539 aaKnown RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 KRT17Q04695 432 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 UBE3AQ05086 875 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 CAMK1Q14012 370 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 NOMO2Q5JPE7 1267 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 AXDND1Q5T1B0 1012 aaPredicted RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 IFNLR1Q8IU57 520 aaPredicted RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 KRI1Q8N9T8 703 aaKnown RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 DEPTORQ8TB45 409 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 URGCPQ8TCY9 931 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 ADAMTS19Q8TE59 1207 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 CCDC51Q96ER9 411 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 CDK5RAP3Q96JB5 506 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 IFT74Q96LB3 600 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 POLD4Q9HCU8 107 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 CLDND1Q9NY35 253 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 SPG21Q9NZD8 308 aa15.99■□□□□ 0.15
COMMD4-225ENST00000569245 FBXO2Q9UK22 296 aaPredicted RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 SRPRBQ9Y5M8 271 aaKnown RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 SPTBN5Q9NRC6 3674 aaKnown RBP15.99■□□□□ 0.15
COMMD4-225ENST00000569245 CUL9Q8IWT3 2517 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 CUTAO60888 179 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 ZC3H11AO75152 810 aaKnown RBP eCLIP15.98■□□□□ 0.15
COMMD4-225ENST00000569245 OFD1O75665 1012 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 EYA4O95677 639 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 SSBP05455 408 aaKnown RBP eCLIP15.98■□□□□ 0.15
COMMD4-225ENST00000569245 BMP1P13497 986 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 ITGA4P13612 1032 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 IRS1P35568 1242 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 PPM1AP35813 382 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 PPP2R5AQ15172 486 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 UBXN11Q5T124 520 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 MRPL10Q7Z7H8 261 aaKnown RBP15.98■□□□□ 0.15
COMMD4-225ENST00000569245 CNNM3Q8NE01 707 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 RSPH1Q8WYR4 309 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 KIFAP3Q92845 792 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 PABPC5Q96DU9 382 aaKnown RBP15.98■□□□□ 0.15
COMMD4-225ENST00000569245 PLIN2Q99541 437 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 EIF2AQ9BY44 585 aaKnown RBP15.98■□□□□ 0.15
COMMD4-225ENST00000569245 GBP3Q9H0R5 595 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 CSRNP2Q9H175 543 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 C2orf40Q9H1Z8 148 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 TLR9Q9NR96 1032 aa15.98■□□□□ 0.15
COMMD4-225ENST00000569245 PRMT7Q9NVM4 692 aaPredicted RBP15.98■□□□□ 0.15
COMMD4-225ENST00000569245 CNTNAP2Q9UHC6 1331 aa15.97■□□□□ 0.15
COMMD4-225ENST00000569245 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms