RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 MYH11P35749 1972 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 NT5C1B-RDH14C9J2C7 533 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 B4GALT5O43286 388 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 ARF4P18085 180 aaPredicted RBP20.38■□□□□ 0.85
CLN3-214ENST00000565140 AFF1P51825 1210 aaKnown RBP20.38■□□□□ 0.85
CLN3-214ENST00000565140 BCAR1P56945 870 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 ATP2C1P98194 919 aaPredicted RBP20.38■□□□□ 0.85
CLN3-214ENST00000565140 ADAM15Q13444 863 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 SLC39A11Q8N1S5 342 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 MICAL1Q8TDZ2 1067 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 MRPS27Q92552 414 aaKnown RBP20.38■□□□□ 0.85
CLN3-214ENST00000565140 PGBD4Q96DM1 585 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 MMTAG2Q9BU76 263 aaKnown RBP20.38■□□□□ 0.85
CLN3-214ENST00000565140 MRPL9Q9BYD2 267 aaKnown RBP20.38■□□□□ 0.85
CLN3-214ENST00000565140 RAB34Q9BZG1 259 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 BHMT2Q9H2M3 363 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 TBC1D13Q9NVG8 400 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 SPG21Q9NZD8 308 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 LZTS1Q9Y250 596 aa20.38■□□□□ 0.85
CLN3-214ENST00000565140 LRRIQ4A6NIV6 560 aa20.37■□□□□ 0.85
CLN3-214ENST00000565140 FSCN2O14926 492 aa20.37■□□□□ 0.85
CLN3-214ENST00000565140 AXLP30530 894 aa20.37■□□□□ 0.85
CLN3-214ENST00000565140 NRIP1P48552 1158 aa20.37■□□□□ 0.85
CLN3-214ENST00000565140 PTCRAQ6ISU1 281 aaPredicted RBP20.37■□□□□ 0.85
CLN3-214ENST00000565140 NOTUMQ6P988 496 aa20.37■□□□□ 0.85
CLN3-214ENST00000565140 RNF39Q9H2S5 420 aa20.37■□□□□ 0.85
CLN3-214ENST00000565140 NRDE2Q9H7Z3 1164 aa20.37■□□□□ 0.85
CLN3-214ENST00000565140 IPPQ9Y573 584 aa20.37■□□□□ 0.85
CLN3-214ENST00000565140 GRXCR2A6NFK2 248 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 E9PMD0 336 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 PER2O15055 1255 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 B4GALT3O60512 393 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 ZC3H11AO75152 810 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLN3-214ENST00000565140 TBX10O75333 385 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 IL9P15248 144 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 NCLP19338 710 aaKnown RBP20.36■□□□□ 0.85
CLN3-214ENST00000565140 PPM1AP35813 382 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 CDCA2Q69YH5 1023 aaPredicted RBP20.36■□□□□ 0.85
CLN3-214ENST00000565140 KCNK18Q7Z418 384 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 TMEM173Q86WV6 379 aaPredicted RBP20.36■□□□□ 0.85
CLN3-214ENST00000565140 CDR2LQ86X02 465 aaPredicted RBP20.36■□□□□ 0.85
CLN3-214ENST00000565140 ZNF280BQ86YH2 543 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 EFHBQ8N7U6 833 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 CSRNP2Q9H175 543 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 TLE6Q9H808 572 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 RSAD1Q9HA92 442 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 DNAJB4Q9UDY4 337 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 PUF60Q9UHX1 559 aaKnown RBP20.36■□□□□ 0.85
CLN3-214ENST00000565140 HES2Q9Y543 173 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 STK24Q9Y6E0 443 aa20.36■□□□□ 0.85
CLN3-214ENST00000565140 TTLL13PA6NNM8 815 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 ALDH7A1P49419 539 aaKnown RBP20.35■□□□□ 0.85
CLN3-214ENST00000565140 KRT17Q04695 432 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 RNASELQ05823 741 aaKnown RBP20.35■□□□□ 0.85
CLN3-214ENST00000565140 NCBP1Q09161 790 aaKnown RBP20.35■□□□□ 0.85
CLN3-214ENST00000565140 CLUL1Q15846 466 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 PLPP4Q5VZY2 271 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 KRT79Q5XKE5 535 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 RSPH1Q8WYR4 309 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 PPP2R3CQ969Q6 453 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 CCDC51Q96ER9 411 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 TCF25Q9BQ70 676 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 GBP3Q9H0R5 595 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 FZD8Q9H461 694 aa20.35■□□□□ 0.85
CLN3-214ENST00000565140 CNTNAP2Q9UHC6 1331 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 TRIP11Q15643 1979 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 A0A1B0GUA9 196 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 VWA3AA6NCI4 1184 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 HIDE1A8MVS5 230 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 DDHD2O94830 711 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 EYA4O95677 639 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 GLP2RO95838 553 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 GALTP07902 379 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 ITGA4P13612 1032 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 RBM10P98175 930 aaKnown RBP20.34■□□□□ 0.85
CLN3-214ENST00000565140 PDE12Q6L8Q7 609 aaKnown RBP20.34■□□□□ 0.85
CLN3-214ENST00000565140 CNNM3Q8NE01 707 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 BCL7CQ8WUZ0 217 aaPredicted RBP20.34■□□□□ 0.85
CLN3-214ENST00000565140 CD320Q9NPF0 282 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 ENTPD7Q9NQZ7 604 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 CLEC1BQ9P126 229 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 DNM3Q9UQ16 869 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 USP20Q9Y2K6 914 aa20.34■□□□□ 0.85
CLN3-214ENST00000565140 POMCP01189 267 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 NAMPTP43490 491 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 SLC11A1P49279 550 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 PUS10Q3MIT2 529 aaKnown RBP20.33■□□□□ 0.85
CLN3-214ENST00000565140 ARL6IP4Q66PJ3 421 aaKnown RBP20.33■□□□□ 0.85
CLN3-214ENST00000565140 PPP4R3CPQ6ZMV5 832 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 FAM178BQ8IXR5 827 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 VN1R2Q8NFZ6 395 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 URGCPQ8TCY9 931 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 PNMA5Q96PV4 448 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 NXF3Q9H4D5 531 aaKnown RBP20.33■□□□□ 0.85
CLN3-214ENST00000565140 MIOSQ9NXC5 875 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 GTF3C3Q9Y5Q9 886 aa20.33■□□□□ 0.85
CLN3-214ENST00000565140 VPS37CA5D8V6 355 aaPredicted RBP20.32■□□□□ 0.84
CLN3-214ENST00000565140 ARL5CA6NH57 179 aa20.32■□□□□ 0.84
CLN3-214ENST00000565140 NPTXRO95502 500 aa20.32■□□□□ 0.84
CLN3-214ENST00000565140 EDN1P05305 212 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms