RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 LRRC37AA6NMS7 1700 aa14.57□□□□□ -0.08
CLK3-215ENST00000564353 SLX4Q8IY92 1834 aa14.57□□□□□ -0.08
CLK3-215ENST00000564353 PPP1R37O75864 691 aa14.57□□□□□ -0.08
CLK3-215ENST00000564353 VAMP7P51809 220 aa14.57□□□□□ -0.08
CLK3-215ENST00000564353 DR1Q01658 176 aa14.57□□□□□ -0.08
CLK3-215ENST00000564353 ZDHHC14Q8IZN3 488 aa14.57□□□□□ -0.08
CLK3-215ENST00000564353 OGFOD1Q8N543 542 aa14.57□□□□□ -0.08
CLK3-215ENST00000564353 MXRA8Q9BRK3 442 aa14.57□□□□□ -0.08
CLK3-215ENST00000564353 COL11A2P13942 1736 aaPredicted RBP14.57□□□□□ -0.08
CLK3-215ENST00000564353 BTNL10A8MVZ5 291 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 H0YGN5 161 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 MMEP08473 750 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 DLATP10515 647 aaKnown RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 GUCY2CP25092 1073 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 MDH1P40925 334 aaKnown RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 IFT88Q13099 833 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 KDM7AQ6ZMT4 941 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 TMC3Q7Z5M5 1100 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 TADA2BQ86TJ2 420 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 CCDC25Q86WR0 208 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 SYCE1Q8N0S2 351 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 LMO3Q8TAP4 145 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 CHURC1Q8WUH1 139 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 RUBCNQ92622 972 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 TAAR1Q96RJ0 339 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 CCT8L2Q96SF2 557 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 FAM118BQ9BPY3 351 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 RANBP17Q9H2T7 1088 aaKnown RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 DMAC2Q9NW81 257 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 HSPBP1Q9NZL4 362 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 CEP83Q9Y592 693 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 NFS1Q9Y697 457 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 GREB1LQ9C091 1923 aaPredicted RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 EGFRP00533 1210 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 ADRB2P07550 413 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 TMEM253P0C7T8 217 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 IBSPP21815 317 aaPredicted RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 COMTP21964 271 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 SKOR1P84550 965 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 PTGISQ16647 500 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 NOP9Q86U38 636 aaKnown RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 CCDC26Q8TAB7 109 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 ZNF473Q8WTR7 871 aaKnown RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 SEMA4DQ92854 862 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 FOXO6A8MYZ6 492 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 ANKRD63C9JTQ0 380 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 ERLIN2O94905 339 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 HOXA7P31268 230 aaPredicted RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 MRPS9P82933 396 aaKnown RBP14.56□□□□□ -0.08
CLK3-215ENST00000564353 PPATQ06203 517 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 SNX1Q13596 522 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 QPCTQ16769 361 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 C1orf220Q5T0J3 134 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 HAUS6Q7Z4H7 955 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 NLRP14Q86W24 1093 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 FBXO25Q8TCJ0 367 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 ATP8B4Q8TF62 1192 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 WNK4Q96J92 1243 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 TCEAL9Q9UHQ7 104 aa14.56□□□□□ -0.08
CLK3-215ENST00000564353 CAP2P40123 477 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 RARRES1P49788 294 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 ZNF131P52739 623 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 MTMR1Q13613 665 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 CUL1Q13616 776 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 PRAMEF18Q5VWM3 479 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 ICE2Q659A1 982 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 MREGQ8N565 214 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 TRIM7Q9C029 511 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 CCDC113Q9H0I3 377 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 CAPN7Q9Y6W3 813 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 CNTNAP1P78357 1384 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 GTPBP10A4D1E9 387 aaKnown RBP14.55□□□□□ -0.08
CLK3-215ENST00000564353 PHF20L1A8MW92 1017 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 IRF6O14896 467 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 CAND2O75155 1236 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 FGFR4P22455 802 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 YWHABP31946 246 aaKnown RBP14.55□□□□□ -0.08
CLK3-215ENST00000564353 TRIP13Q15645 432 aaPredicted RBP14.55□□□□□ -0.08
CLK3-215ENST00000564353 CCDC38Q502W7 563 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 XKR9Q5GH70 373 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 STXBP4Q6ZWJ1 553 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 RASGEF1CQ8N431 466 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 MYCBPAPQ8TBZ2 947 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 FMO2Q99518 471 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 SYT11Q9BT88 431 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 TMEM117Q9H0C3 514 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 EPN3Q9H201 632 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 LARSQ9P2J5 1176 aaKnown RBP14.55□□□□□ -0.08
CLK3-215ENST00000564353 HERC5Q9UII4 1024 aaKnown RBP14.55□□□□□ -0.08
CLK3-215ENST00000564353 PNMA2Q9UL42 364 aa14.55□□□□□ -0.08
CLK3-215ENST00000564353 TTC27Q6P3X3 843 aa14.54□□□□□ -0.08
CLK3-215ENST00000564353 FLAD1Q8NFF5 587 aa14.54□□□□□ -0.08
CLK3-215ENST00000564353 PPM1EQ8WY54 764 aa14.54□□□□□ -0.08
CLK3-215ENST00000564353 LRRC45Q96CN5 670 aa14.54□□□□□ -0.08
CLK3-215ENST00000564353 DAAM1Q9Y4D1 1078 aa14.54□□□□□ -0.08
CLK3-215ENST00000564353 ZNF536O15090 1300 aa14.54□□□□□ -0.08
CLK3-215ENST00000564353 ATRNL1Q5VV63 1379 aa14.54□□□□□ -0.08
CLK3-215ENST00000564353 DHX15O43143 795 aaKnown RBP14.54□□□□□ -0.08
CLK3-215ENST00000564353 PYGMP11217 842 aa14.54□□□□□ -0.08
CLK3-215ENST00000564353 BCRP11274 1271 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms