RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 NCK2O43639 380 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 ZC3H11AO75152 810 aaKnown RBP eCLIP17.35■□□□□ 0.37
VPS39-203ENST00000561797 ARF4P18085 180 aaPredicted RBP17.35■□□□□ 0.37
VPS39-203ENST00000561797 NRIP1P48552 1158 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 BCAR1P56945 870 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 PLCB3Q01970 1234 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 RNASELQ05823 741 aaKnown RBP17.35■□□□□ 0.37
VPS39-203ENST00000561797 PCBP1Q15365 356 aaKnown RBP eCLIP17.35■□□□□ 0.37
VPS39-203ENST00000561797 NOTUMQ6P988 496 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 MRPL10Q7Z7H8 261 aaKnown RBP17.35■□□□□ 0.37
VPS39-203ENST00000561797 CDR2LQ86X02 465 aaPredicted RBP17.35■□□□□ 0.37
VPS39-203ENST00000561797 BSNDQ8WZ55 320 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 MRPS27Q92552 414 aaKnown RBP17.35■□□□□ 0.37
VPS39-203ENST00000561797 PPP2R3CQ969Q6 453 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 NFKBIZQ9BYH8 718 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 GBP3Q9H0R5 595 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 RSAD1Q9HA92 442 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 FOXD4L1Q9NU39 408 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 TBC1D13Q9NVG8 400 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 PUF60Q9UHX1 559 aaKnown RBP17.35■□□□□ 0.37
VPS39-203ENST00000561797 A0A0C4DFX4 3053 aa17.35■□□□□ 0.37
VPS39-203ENST00000561797 ITGA4P13612 1032 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 LIG1P18858 919 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 NCLP19338 710 aaKnown RBP17.34■□□□□ 0.37
VPS39-203ENST00000561797 PPM1AP35813 382 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 LTBRP36941 435 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 ALDH7A1P49419 539 aaKnown RBP17.34■□□□□ 0.37
VPS39-203ENST00000561797 KRT17Q04695 432 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 COL19A1Q14993 1142 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 CLUL1Q15846 466 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 AMHR2Q16671 573 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 PLPP4Q5VZY2 271 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 PTCRAQ6ISU1 281 aaPredicted RBP17.34■□□□□ 0.37
VPS39-203ENST00000561797 ZBTB8OSQ8IWT0 167 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 SMG8Q8ND04 991 aaKnown RBP17.34■□□□□ 0.37
VPS39-203ENST00000561797 URGCPQ8TCY9 931 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 MMTAG2Q9BU76 263 aaKnown RBP17.34■□□□□ 0.37
VPS39-203ENST00000561797 APOL6Q9BWW8 343 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 CSRNP2Q9H175 543 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 NRDE2Q9H7Z3 1164 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 TLE6Q9H808 572 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 DNM3Q9UQ16 869 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 HES2Q9Y543 173 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 IPPQ9Y573 584 aa17.34■□□□□ 0.37
VPS39-203ENST00000561797 CNTNAP2Q9UHC6 1331 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 PER2O15055 1255 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 EYA4O95677 639 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 IL9P15248 144 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 AFF1P51825 1210 aaKnown RBP17.33■□□□□ 0.36
VPS39-203ENST00000561797 DLX2Q07687 328 aaPredicted RBP17.33■□□□□ 0.36
VPS39-203ENST00000561797 ADAM15Q13444 863 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 CTC1Q2NKJ3 1217 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 SLC39A11Q8N1S5 342 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 CNNM3Q8NE01 707 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 CCDC51Q96ER9 411 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 PLIN2Q99541 437 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 TRIM6Q9C030 488 aaPredicted RBP17.33■□□□□ 0.36
VPS39-203ENST00000561797 RNF39Q9H2S5 420 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 ENTPD7Q9NQZ7 604 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 DNAJB4Q9UDY4 337 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 LZTS1Q9Y250 596 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 CUL9Q8IWT3 2517 aa17.33■□□□□ 0.36
VPS39-203ENST00000561797 FSCN2O14926 492 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 NPTXRO95502 500 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 POMCP01189 267 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 NDUFV1P49821 464 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 PPP2R5AQ15172 486 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 TMEM132AQ24JP5 1023 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 PDE12Q6L8Q7 609 aaKnown RBP17.32■□□□□ 0.36
VPS39-203ENST00000561797 TMC7Q7Z402 723 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 KCNK18Q7Z418 384 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 BRAPQ7Z569 592 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 ZNF280BQ86YH2 543 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 DEPTORQ8TB45 409 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 RSPH1Q8WYR4 309 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 IFT74Q96LB3 600 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 FAM193BQ96PV7 902 aaPredicted RBP17.32■□□□□ 0.36
VPS39-203ENST00000561797 TCF25Q9BQ70 676 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 C2orf40Q9H1Z8 148 aa17.32■□□□□ 0.36
VPS39-203ENST00000561797 PRMT7Q9NVM4 692 aaPredicted RBP17.32■□□□□ 0.36
VPS39-203ENST00000561797 GRXCR2A6NFK2 248 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 K7ELQ4 463 aaPredicted RBP17.31■□□□□ 0.36
VPS39-203ENST00000561797 B4GALT3O60512 393 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 TBX10O75333 385 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 DDHD2O94830 711 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 GALTP07902 379 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 PDCP20941 246 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 CA8P35219 290 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 NAMPTP43490 491 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 ARL6IP4Q66PJ3 421 aaKnown RBP17.31■□□□□ 0.36
VPS39-203ENST00000561797 CDCA2Q69YH5 1023 aaPredicted RBP17.31■□□□□ 0.36
VPS39-203ENST00000561797 SLC27A1Q6PCB7 646 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 EFHBQ8N7U6 833 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 KIFAP3Q92845 792 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 TMEM169Q96HH4 297 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 PNMA5Q96PV4 448 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 KIFC3Q9BVG8 833 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 FZD8Q9H461 694 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 NXF3Q9H4D5 531 aaKnown RBP17.31■□□□□ 0.36
VPS39-203ENST00000561797 UBN1Q9NPG3 1134 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms